Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17f22
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 174 3e-44
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 174 3e-44
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 173 5e-44
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 124 2e-29
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 46 1e-05
11_04_0418 - 17443989-17444082,17445153-17445406,17445709-174457... 33 0.13
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246... 32 0.22
01_06_0514 + 29955129-29955796,29955903-29956023 29 2.0
12_01_0536 - 4212206-4212369,4212476-4212629,4212713-4212811,421... 28 2.7
11_06_0648 + 25873779-25874279,25874418-25875548 28 2.7
08_02_0286 - 15326876-15328135 28 2.7
03_04_0079 + 17102623-17102644,17102794-17102897,17104461-171046... 28 3.6
04_04_0641 + 26896986-26897257,26897263-26897437 27 8.2
01_01_0582 - 4317216-4317731 27 8.2
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 174 bits (423), Expect = 3e-44
Identities = 85/109 (77%), Positives = 94/109 (86%)
Frame = +2
Query: 95 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 274
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 275 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 421
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIK 117
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 174 bits (423), Expect = 3e-44
Identities = 85/109 (77%), Positives = 94/109 (86%)
Frame = +2
Query: 95 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 274
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 275 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 421
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 69 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIK 117
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 173 bits (421), Expect = 5e-44
Identities = 85/109 (77%), Positives = 94/109 (86%)
Frame = +2
Query: 95 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 274
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 35 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIA 94
Query: 275 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 421
+ TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 95 CYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 124 bits (300), Expect = 2e-29
Identities = 60/80 (75%), Positives = 69/80 (86%)
Frame = +2
Query: 95 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 274
N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA
Sbjct: 9 NPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIA 68
Query: 275 VHCTVRGAKAEEILERGLKV 334
+ TVRG KA ++LE GLK+
Sbjct: 69 CYVTVRGEKAMQLLESGLKI 88
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 46.4 bits (105), Expect = 1e-05
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
Frame = +2
Query: 95 NVMRNLHIRKLCLNICVG-ESGDR--LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 265
NV + + K+ +N +G E+G+ L A K L +TGQ PV +KA+ +V SF IR
Sbjct: 98 NVHQVPKVEKIVVNCGLGAEAGNSKGLESAMKDLAMITGQWPVKTKAKKSVASFKIREGN 157
Query: 266 KIAVHCTVRGAKAEEILER----GL-KVREY-ELRRDNFSATGNFGFGIQE 400
I + T+RG L+R GL + ++ + ++F GNF G+++
Sbjct: 158 TIGIAVTLRGRVMFNFLDRLINLGLPRTMDFLGVNPNSFDGHGNFTIGLRD 208
>11_04_0418 -
17443989-17444082,17445153-17445406,17445709-17445783,
17446156-17446377,17446789-17446941,17447031-17447167,
17447615-17447933
Length = 417
Score = 32.7 bits (71), Expect = 0.13
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 263 EKIAVHCTVRGAKAEEILERGLK 331
EKIA + TVRG KA ++LE GLK
Sbjct: 280 EKIACYVTVRGEKAMQLLESGLK 302
>06_03_1403 +
29923503-29923821,29924269-29924405,29924495-29924647,
29924690-29925280,29925523-29925597,29925901-29926169,
29927238-29927331
Length = 545
Score = 31.9 bits (69), Expect = 0.22
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2
Query: 263 EKIAVHCTVRGAKAEEILERGLK 331
EKIA + TVRG KA ++LE GLK
Sbjct: 403 EKIACYVTVRGEKAMQLLEIGLK 425
>01_06_0514 + 29955129-29955796,29955903-29956023
Length = 262
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -3
Query: 378 LPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTAIFSLRRIPKDRTVYLALENTGCC 202
L V + + R + S+ T +P+ + S LA V + + +R+ +DR +Y+ L C
Sbjct: 171 LEVCKGVPRSSKKSIFTIEPIGELPSTLAC-AVSRSCCYCRKRLQQDRDIYMYLGEKAFC 229
Query: 201 PVSC 190
C
Sbjct: 230 SNEC 233
>12_01_0536 -
4212206-4212369,4212476-4212629,4212713-4212811,
4212917-4213124,4214437-4214639,4214728-4214801,
4214968-4215043,4215256-4215360
Length = 360
Score = 28.3 bits (60), Expect = 2.7
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 164 LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGL 328
+T A +++ +G FSK RY R GI K + V+ A+ E + E G+
Sbjct: 305 VTEAGGLVKDASGNDLDFSKGRYLDRDAGIIATNKYLMPLVVKAAQ-EAMKEEGI 358
>11_06_0648 + 25873779-25874279,25874418-25875548
Length = 543
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 182 VLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEE 310
+LE LTG++P FSK + R E+ C G EE
Sbjct: 398 MLEVLTGKKPYFSKEEWEKEKTEERVEEEKREECEQEGKNTEE 440
>08_02_0286 - 15326876-15328135
Length = 419
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 257 RNEKIAVHCTVR-GAKAEEILERGLKVREYELRR 355
R +++ V C V A A+E+L RG + + ELRR
Sbjct: 147 RGDRLVVECAVLLAADADEVLRRGPRPLDDELRR 180
>03_04_0079 +
17102623-17102644,17102794-17102897,17104461-17104660,
17104864-17105005,17105024-17105290
Length = 244
Score = 27.9 bits (59), Expect = 3.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = -1
Query: 191 APTPWRHESACHRIHQHICSS 129
APTP+ ++ A H + H+C++
Sbjct: 63 APTPYENDKALHFLRHHLCAT 83
>04_04_0641 + 26896986-26897257,26897263-26897437
Length = 148
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 264 SLRRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSP 145
S R+ KDR V A + C P++ + LA + P+SP
Sbjct: 45 SAGRLAKDRAVSEAEADDDCLPLNHHSLLADVTATDPNSP 84
>01_01_0582 - 4317216-4317731
Length = 171
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 258 RRIPKDRTVYLALENTGCCPVSCSNTLAARV 166
RRI ++ + L TGC P S S AARV
Sbjct: 98 RRILRENKKRILLCATGCVPASSSAAAAARV 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,768,423
Number of Sequences: 37544
Number of extensions: 200541
Number of successful extensions: 596
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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