Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17f22
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   206   7e-54
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   205   1e-53
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    29   1.4  
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    29   1.8  
U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine rece...    28   3.2  
Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm rece...    27   4.2  
U80027-17|AAC48114.1|   90|Caenorhabditis elegans Hypothetical p...    27   5.5  
U61946-8|AAC24392.1|  185|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr...    27   7.3  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  206 bits (502), Expect = 7e-54
 Identities = 96/111 (86%), Positives = 105/111 (94%)
 Frame = +2

Query: 89  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEK 268
           ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEK
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEK 74

Query: 269 IAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 421
           IAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIK
Sbjct: 75  IAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIK 125


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  205 bits (500), Expect = 1e-53
 Identities = 96/110 (87%), Positives = 104/110 (94%)
 Frame = +2

Query: 92  KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI 271
           +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKI
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKI 75

Query: 272 AVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 421
           AVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIK
Sbjct: 76  AVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIK 125


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 385  AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 248
            AK+ + G ++ PQ  FS+F+  +  FF  +    T+  N  I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 346 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 257
           ++  DF+  +KDFF C   SD T  S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 284 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQ 397
           ++R   AEE+  RG  +  Y E+RR     TG FG G +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFE 391


>U29488-1|AAA68773.2|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 31 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 301 FSSSDCTMDSNLFITTDTKRPHCIPSLGKYRLLS 200
           F SS+C ++SNL+  T+     C  SL   RLLS
Sbjct: 97  FQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130


>Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical
           protein C09F9.3 protein.
          Length = 800

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 292 SDCTMDSNLFITTDTKRPHCIPSLGK---YRLLSCELLQHL 179
           S CT+D   F   D+K+  C+ S+ K   Y +++ E+  H+
Sbjct: 205 SICTIDGQRFSLGDSKKNFCLQSVSKAFNYAIVASEIGSHV 245


>AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 85 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 346 FIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDTKRPH 236
           ++  DF+T +K+FF   +   T  S+  +TT  K  H
Sbjct: 300 YVIKDFRTAVKNFFKRGTKSGTSPSSAVLTTKKKAWH 336


>U80027-17|AAC48114.1|   90|Caenorhabditis elegans Hypothetical
           protein T28A11.4 protein.
          Length = 90

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 278 GQQSFHYDGYQKTALYT*PWKIQAVVL*VAPTPWRHESACHRIHQ 144
           G+Q+FH++G +K A     WK       V P+ ++  S+  +IHQ
Sbjct: 51  GEQTFHFNGPEKGAFLDSDWKE------VDPSNYQMGSSHQKIHQ 89


>U61946-8|AAC24392.1|  185|Caenorhabditis elegans Hypothetical
           protein F47C12.7 protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 334 DFQTPLKDFFCFSSSDCTMDSNLFITTDTK 245
           DF T   +F CF S DC+ D+  +  T  K
Sbjct: 61  DFPTFHYEFNCFLSHDCSTDNKWYCQTRAK 90


>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical protein
            C31E10.8 protein.
          Length = 1272

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 201  PVSCSNTLAARVSLSPDSPTHMF 133
            P+ C+   A+RVS+S D  TH +
Sbjct: 1003 PIFCAEKRASRVSISIDRETHQY 1025


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,215,541
Number of Sequences: 27780
Number of extensions: 178456
Number of successful extensions: 513
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)