Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17f21
(389 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 138 3e-34
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 137 6e-34
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 27 1.0
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.4
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 1.4
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 1.8
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 25 3.1
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 3.1
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 25 5.5
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 5.5
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 5.5
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 24 7.2
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 24 7.2
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 24 9.5
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 9.5
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 24 9.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 24 9.5
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 138 bits (334), Expect = 3e-34
Identities = 66/90 (73%), Positives = 74/90 (82%)
Frame = +2
Query: 119 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 298
IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQEE
Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76
Query: 299 ERERRDNYVPEVSALEHDIIEVDPDTKDML 388
ERER+D YVPEVS LE D I VD DTKDML
Sbjct: 77 ERERKDQYVPEVSELEKDKINVDQDTKDML 106
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 137 bits (331), Expect = 6e-34
Identities = 65/90 (72%), Positives = 74/90 (82%)
Frame = +2
Query: 119 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 298
IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQEE
Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76
Query: 299 ERERRDNYVPEVSALEHDIIEVDPDTKDML 388
ERER+D YVPEVS LE D + VD DTKDML
Sbjct: 77 ERERKDQYVPEVSELEVDRVNVDQDTKDML 106
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 1.0
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -3
Query: 207 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 97
RG+V + AIS+ ++ F+ S++++ + + FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 260 SQVRGISIKLQEEERERRDNYVPEV 334
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 245 RRLRHSQVRGISIKLQEEERERRDNYVPEVS 337
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 1.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 388 QHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 275
Q L VG+ DD+ +R+ ++ TP++ L DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 102 FLTVLVRTRPMAEVVQRCF 46
F T L R P++E+V RCF
Sbjct: 413 FKTSLYRDHPVSEIVGRCF 431
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 225 PAILFLRGLVGMIAISSHILLFVSK 151
P I LRGLV A H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.6 bits (51), Expect = 5.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 179 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 271
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 5.5
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = +2
Query: 284 KLQEEERERRDNYVPEVSALEHDIIEVD 367
+ + +E+ RRD + L+H+I+ ++
Sbjct: 102 RARRKEKNRRDEVAEAILGLQHEIVRIN 129
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 251 LRHSQVRGISIKLQEEERERRDNYVPEVSALEH 349
L++ + K Q+ ++R D + EVSA++H
Sbjct: 853 LKYKSLVSFMFKEQDANKKREDFHSGEVSAIQH 885
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 24.2 bits (50), Expect = 7.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 100 LDGFSPDTTHG*SCTALLLTESKRSERKKE 11
LDG S D G S ALL +K +RK E
Sbjct: 7 LDGASMDELAGKSYEALLYLMNKNKKRKPE 36
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 24.2 bits (50), Expect = 7.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 83 GHDPWLKLYSAAFDRIK 33
G D WLKL+ +AF + +
Sbjct: 146 GDDTWLKLFPSAFSKFE 162
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 194 PTKPLRNKIAGFATHLMRRLRHS 262
P + +RNK A H+M RL ++
Sbjct: 43 PHESVRNKTISIANHIMTRLNNN 65
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 266 VRGISIKLQEEERERRDNYV 325
+ G+S+KLQE+E +R + V
Sbjct: 365 IGGLSLKLQEQELRKRPDIV 384
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 23.8 bits (49), Expect = 9.5
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 206 LRNKIAGF----ATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEV 364
+R +IA F A H ++R S+ ++ + E +R Y+P +S + +EV
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEV 428
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 23.8 bits (49), Expect = 9.5
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 119 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKI 220
+++ + LTL + + + E+IA P K NK+
Sbjct: 438 LQQIFIELTLKTEQEEYVREQIAWTPIKYFNNKV 471
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,125
Number of Sequences: 5004
Number of extensions: 26402
Number of successful extensions: 86
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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