Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17f21
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                            131   2e-31
10_07_0174 + 13815478-13815903                                        129   7e-31
06_01_0889 - 6807449-6809257                                           30   0.75 
03_02_0943 + 12598616-12598789,12599790-12601250                       28   3.0  
03_02_0324 - 7463482-7463601,7463660-7463736,7463827-7463883,746...    27   4.0  
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681...    27   5.3  
07_01_0358 - 2631214-2632992                                           26   9.2  

>03_01_0066 - 537729-538163
          Length = 144

 Score =  131 bits (316), Expect = 2e-31
 Identities = 60/90 (66%), Positives = 77/90 (85%)
 Frame = +2

Query: 119 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 298
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQEE 76

Query: 299 ERERRDNYVPEVSALEHDIIEVDPDTKDML 388
           ERERR ++VP+ SALE D I VD +T DML
Sbjct: 77  ERERRMDFVPDRSALEVDDIRVDKETLDML 106


>10_07_0174 + 13815478-13815903
          Length = 141

 Score =  129 bits (312), Expect = 7e-31
 Identities = 59/90 (65%), Positives = 76/90 (84%)
 Frame = +2

Query: 119 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 298
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++   VRGIS+KLQEE
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEE 76

Query: 299 ERERRDNYVPEVSALEHDIIEVDPDTKDML 388
           ERERR ++VPE SALE + I VD +T +ML
Sbjct: 77  ERERRMDFVPEKSALEVEEIRVDKETMEML 106


>06_01_0889 - 6807449-6809257
          Length = 602

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 251 LRHSQVRGI-SIKLQEEERERRDNYVPEVSALEHDIIEVDPD 373
           LRH Q R I ++ +    R R + YVP+     HD+ E D +
Sbjct: 487 LRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDVAEEDKE 528


>03_02_0943 + 12598616-12598789,12599790-12601250
          Length = 544

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = +2

Query: 221 AGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDML 388
           A +++HL+RR+        + K Q EE ++  +   + + LEHD+I  + +T D+L
Sbjct: 41  AAWSSHLIRRMFAPP----NPKEQSEESKQPVDIKEQAAQLEHDLIIKEKETLDVL 92


>03_02_0324 -
           7463482-7463601,7463660-7463736,7463827-7463883,
           7464154-7464246,7464528-7464654,7464836-7466794
          Length = 810

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 257 HSQVRGISIKLQEEERERRD-NYVPEVSALEHDIIEVDPD 373
           H Q + I  KL E  R  R+  Y PEV A  HD+ E D +
Sbjct: 551 HPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKE 590


>11_04_0376 -
           16965504-16966101,16966212-16966416,16967175-16968197,
           16968241-16968892,16969025-16969387,16970095-16970451
          Length = 1065

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 373 VGVYFDDVMFESRHFWDIVVTPL 305
           V + FDDV  E   +W++++TP+
Sbjct: 252 VFLVFDDVWNERSDYWELLITPM 274


>07_01_0358 - 2631214-2632992
          Length = 592

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 206 LRNKIAGFATHLMRRLRHSQVRGISIKLQE-EERERRDNYVPEVSALEHDIIEVDPDT 376
           LRN +  F   +M    H +   I   L E  ER RR+ Y+P  S +  DI E + +T
Sbjct: 465 LRNSVYEF---VMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKET 519


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,059,893
Number of Sequences: 37544
Number of extensions: 152247
Number of successful extensions: 408
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)