Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17f20
         (288 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    20   5.3  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    20   5.3  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    20   5.3  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    20   5.3  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    20   5.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   7.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   7.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    20   7.0  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -3

Query: 163 EPCVVVVLPNEKAIETITKLNYKP*TYNYRFL 68
           EP ++  L N          NYK   YN  ++
Sbjct: 78  EPKIISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -3

Query: 163 EPCVVVVLPNEKAIETITKLNYKP*TYNYRFL 68
           EP ++  L N          NYK   YN  ++
Sbjct: 78  EPKIISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -3

Query: 163 EPCVVVVLPNEKAIETITKLNYKP*TYNYRFL 68
           EP ++  L N          NYK   YN  ++
Sbjct: 78  EPKIISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -3

Query: 163 EPCVVVVLPNEKAIETITKLNYKP*TYNYRFL 68
           EP ++  L N          NYK   YN  ++
Sbjct: 78  EPKIISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 9/32 (28%), Positives = 13/32 (40%)
 Frame = -3

Query: 163 EPCVVVVLPNEKAIETITKLNYKP*TYNYRFL 68
           EP ++  L N          NYK   YN  ++
Sbjct: 78  EPKIISSLSNNYNYSNYNNNNYKQLCYNINYI 109


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 4/17 (23%), Positives = 11/17 (64%)
 Frame = +2

Query: 215 CYNHQYWV*FWYYDNLI 265
           C+N  YW+ + +  +++
Sbjct: 418 CFNLMYWIIYLHISDVV 434


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 4/17 (23%), Positives = 11/17 (64%)
 Frame = +2

Query: 215 CYNHQYWV*FWYYDNLI 265
           C+N  YW+ + +  +++
Sbjct: 418 CFNLMYWIIYLHISDVV 434


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 206 NKYCYNHQYWV*FWYYDNLI 265
           NKY YN+  +    YY N I
Sbjct: 102 NKYNYNNNNYNKKLYYKNYI 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,224
Number of Sequences: 438
Number of extensions: 1952
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)