Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17f17
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical pr...    33   0.079
Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical pr...    33   0.079
AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical...    33   0.079
Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    27   5.2  
Z69661-6|CAA93492.4|  299|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       27   5.2  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       27   5.2  
AF016676-5|AAG24100.1|  473|Caenorhabditis elegans Cytochrome p4...    27   5.2  
U41995-13|AAA83469.1|  223|Caenorhabditis elegans Hypothetical p...    27   6.9  
U28943-5|AAA68359.2|  435|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF016435-2|AAB65877.2|  380|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 33.5 bits (73), Expect = 0.079
 Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 33/150 (22%)
 Frame = -2

Query: 376 NTSKVSGSYSSTTKGYFLD-LKSAELP--------RLDMPLM*TSTTASGVLNG----SV 236
           N +KV+GS  S  KG   D L + ELP         + M L       +G+LN     SV
Sbjct: 29  NGAKVTGSSLSEAKGLIADMLMNKELPGNVASCLRAVTMLLEQRPLPLNGLLNDFGLPSV 88

Query: 235 INNPFHSEFS--STERPREAENISFKRLSK------VLLEPEKLNDSGLWRMLSSP---- 92
           + NP+  E       +PR   NI+F  ++       V  EP K   S  W+  +SP    
Sbjct: 89  VENPYGGESMVVGASKPR-ISNITFSTVTSATGLPTVPAEPNKARSSSYWKTEASPSNNN 147

Query: 91  --EALIPIIEEI------KKTHTDTIVAAI 26
             E  + ++ +I        TH DT+V  I
Sbjct: 148 EHETPVDLLRKISVSRKESGTHVDTVVTTI 177


>Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 33.5 bits (73), Expect = 0.079
 Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 33/150 (22%)
 Frame = -2

Query: 376 NTSKVSGSYSSTTKGYFLD-LKSAELP--------RLDMPLM*TSTTASGVLNG----SV 236
           N +KV+GS  S  KG   D L + ELP         + M L       +G+LN     SV
Sbjct: 29  NGAKVTGSSLSEAKGLIADMLMNKELPGNVASCLRAVTMLLEQRPLPLNGLLNDFGLPSV 88

Query: 235 INNPFHSEFS--STERPREAENISFKRLSK------VLLEPEKLNDSGLWRMLSSP---- 92
           + NP+  E       +PR   NI+F  ++       V  EP K   S  W+  +SP    
Sbjct: 89  VENPYGGESMVVGASKPR-ISNITFSTVTSATGLPTVPAEPNKARSSSYWKTEASPSNNN 147

Query: 91  --EALIPIIEEI------KKTHTDTIVAAI 26
             E  + ++ +I        TH DT+V  I
Sbjct: 148 EHETPVDLLRKISVSRKESGTHVDTVVTTI 177


>AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 33.5 bits (73), Expect = 0.079
 Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 33/150 (22%)
 Frame = -2

Query: 376 NTSKVSGSYSSTTKGYFLD-LKSAELP--------RLDMPLM*TSTTASGVLNG----SV 236
           N +KV+GS  S  KG   D L + ELP         + M L       +G+LN     SV
Sbjct: 29  NGAKVTGSSLSEAKGLIADMLMNKELPGNVASCLRAVTMLLEQRPLPLNGLLNDFGLPSV 88

Query: 235 INNPFHSEFS--STERPREAENISFKRLSK------VLLEPEKLNDSGLWRMLSSP---- 92
           + NP+  E       +PR   NI+F  ++       V  EP K   S  W+  +SP    
Sbjct: 89  VENPYGGESMVVGASKPR-ISNITFSTVTSATGLPTVPAEPNKARSSSYWKTEASPSNNN 147

Query: 91  --EALIPIIEEI------KKTHTDTIVAAI 26
             E  + ++ +I        TH DT+V  I
Sbjct: 148 EHETPVDLLRKISVSRKESGTHVDTVVTTI 177


>Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical
           protein F32A7.5c protein.
          Length = 877

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 225 GLLITDPFNTPEAVVEVYISGISSLG---SSADFKSKKYPLV 341
           G+L+  P  T ++VV V ISG SSL     S D  +K  P +
Sbjct: 173 GVLLWRPAMTDQSVVRVLISGTSSLSRIQQSLDKAAKSLPFL 214


>Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical
           protein F32A7.5b protein.
          Length = 764

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 225 GLLITDPFNTPEAVVEVYISGISSLG---SSADFKSKKYPLV 341
           G+L+  P  T ++VV V ISG SSL     S D  +K  P +
Sbjct: 173 GVLLWRPAMTDQSVVRVLISGTSSLSRIQQSLDKAAKSLPFL 214


>Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical
           protein F32A7.5a protein.
          Length = 878

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 225 GLLITDPFNTPEAVVEVYISGISSLG---SSADFKSKKYPLV 341
           G+L+  P  T ++VV V ISG SSL     S D  +K  P +
Sbjct: 173 GVLLWRPAMTDQSVVRVLISGTSSLSRIQQSLDKAAKSLPFL 214


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 35  NYGICMGFLNLFNNRYQCLWRTKH 106
           +YG CMG  N F+++ QC+ + K+
Sbjct: 65  HYGGCMGTKNRFSSKQQCVKQCKY 88


>Z69661-6|CAA93492.4|  299|Caenorhabditis elegans Hypothetical
           protein F48F7.2 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -3

Query: 273 LRQLLQEC*TDQLSIIHSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDY 112
           LR+L+++   D L     ++S  +++ ++ Q + LLKD+     N  N T QDY
Sbjct: 89  LRKLVRQAEDDFLEFTKQVQSVTEKRMRQNQ-LELLKDNLNKLINLFNETHQDY 141


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 35  NYGICMGFLNLFNNRYQCLWRTKH 106
           +YG CMG  N F+++ QC+ + K+
Sbjct: 65  HYGGCMGTKNRFSSKQQCVKQCKY 88


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 35  NYGICMGFLNLFNNRYQCLWRTKH 106
           +YG CMG  N F+++ QC+ + K+
Sbjct: 65  HYGGCMGTKNRFSSKQQCVKQCKY 88


>AF016676-5|AAG24100.1|  473|Caenorhabditis elegans Cytochrome p450
           family protein 33C7 protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 387 FXVLIHQKYQVHTHLQLKDTFW 322
           F      +YQVHTHL  K TF+
Sbjct: 452 FIANFFNRYQVHTHLSFKITFF 473


>U41995-13|AAA83469.1|  223|Caenorhabditis elegans Hypothetical
           protein E02C12.12 protein.
          Length = 223

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 60  LISSIIGINASGELSILHSPESLSFSGSSKTFESLLKEIFS 182
           LIS + GI     L    S E  +F+G  +  ES+ +E+F+
Sbjct: 175 LISLVRGIATFAALGETLSEEEKAFAGGPEYLESMFEEVFT 215


>U28943-5|AAA68359.2|  435|Caenorhabditis elegans Hypothetical
           protein E04F6.6 protein.
          Length = 435

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 382 CFNTSKVSGSYSSTTKGYFLDLKSAELPRLD 290
           CF  +K    Y S  KGYF D +   LP+ D
Sbjct: 228 CFGGNKTEEKYGSKCKGYFHDCQRF-LPKSD 257


>AF016435-2|AAB65877.2|  380|Caenorhabditis elegans Hypothetical
           protein F59D6.2 protein.
          Length = 380

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 304 LPRLDMPLM*TSTTASGVLNGSV 236
           LP+LD PL  T  T S V NG+V
Sbjct: 189 LPQLDQPLFTTYFTKSSVHNGTV 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,990,455
Number of Sequences: 27780
Number of extensions: 193905
Number of successful extensions: 675
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)