Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17f15
(396 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 99 1e-21
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 99 1e-21
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 59 1e-09
01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044... 30 0.78
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 29 1.0
05_06_0228 + 26570066-26571352 28 3.1
03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635 28 3.1
01_02_0078 - 10894871-10895841,10897268-10898426 28 3.1
05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422 27 4.1
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 27 4.1
09_04_0329 + 16726501-16726750,16726843-16726930,16727280-167273... 27 5.5
04_03_0916 + 20794240-20794246,20794585-20796545 27 7.2
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114... 27 7.2
02_03_0349 + 18010414-18014283 27 7.2
01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038 27 7.2
12_02_1263 + 27423411-27423464,27423985-27424104,27424200-274242... 26 9.6
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842... 26 9.6
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521... 26 9.6
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 99.1 bits (236), Expect = 1e-21
Identities = 45/73 (61%), Positives = 60/73 (82%)
Frame = +3
Query: 135 RDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELMEKGLIKQV 314
++K+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ +LM++GLI+ V
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAMKDLMDRGLIRMV 93
Query: 315 VQHHGQVIYTRAT 353
H Q IYTRAT
Sbjct: 94 SVHCSQQIYTRAT 106
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 98.7 bits (235), Expect = 1e-21
Identities = 45/73 (61%), Positives = 59/73 (80%)
Frame = +3
Query: 135 RDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELMEKGLIKQV 314
++K+NN VLFD+ TY+KL EVP+YK ITP+V+SERL++ GSLARRA+ +LM +GLI+ V
Sbjct: 34 KEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLARRAINDLMTRGLIRMV 93
Query: 315 VQHHGQVIYTRAT 353
H Q IYTRAT
Sbjct: 94 SVHSSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 59.3 bits (137), Expect = 1e-09
Identities = 25/38 (65%), Positives = 33/38 (86%)
Frame = +3
Query: 135 RDKLNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLK 248
++K+NN VLFDK TY+KL EVP+YK ITP+V+SERL+
Sbjct: 968 KEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 39.5 bits (88), Expect = 0.001
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +3
Query: 249 VRGSLARRALIELMEKGLIKQVVQHHGQVIYTRAT 353
+ GSLAR+A+ +L +G I+ V H Q+IYTRAT
Sbjct: 1090 INGSLARQAIKDLESRGAIRVVSVHSSQLIYTRAT 1124
>01_05_0662 -
24103475-24103735,24103831-24104085,24104280-24104451,
24104535-24104762,24104864-24104997,24105101-24105184,
24105273-24105563,24105660-24105992,24106081-24106334,
24106435-24106591,24106674-24106777,24106879-24107039,
24107216-24107529,24107614-24107895,24107991-24108292,
24108367-24108457,24108566-24108619,24108785-24108861,
24108963-24109207,24109322-24109410,24110811-24111254
Length = 1443
Score = 29.9 bits (64), Expect = 0.78
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 143 LVTNFSFGPLXLLGFAATGSFL 78
+V + +FGPL LL FAA G F+
Sbjct: 662 MVVSHTFGPLSLLAFAALGGFI 683
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 216 ITPAVVSERLKVRGSLARRALIELMEKGLIKQVVQHHGQVIYTRATKGD 362
+TPAV E+ + + AR+ L + E I+ +QH+ Q+++ +K D
Sbjct: 613 LTPAVYLEQHRFKLEKARQRLTDHRECQNIEATIQHNQQLVHVEKSKLD 661
>05_06_0228 + 26570066-26571352
Length = 428
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Frame = -3
Query: 160 NTW---LFNLSRTFPLDHXFFLALPPPD---PSXXFCVLXGCLAEAFASFLG 23
N+W L L P +LALP D P+ C+L GC A AF+ G
Sbjct: 38 NSWRVALAKLEAPAPPPPLPWLALPESDDGLPATVSCILSGCRAHAFSVLQG 89
>03_01_0620 - 4566616-4567374,4567455-4567977,4568106-4568635
Length = 603
Score = 27.9 bits (59), Expect = 3.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 310 CLMRPFSISSMSALLAREPRTFNL 239
C +RP S +++ AL+AR PR L
Sbjct: 217 CYVRPVSFAALEALVARSPRLTRL 240
>01_02_0078 - 10894871-10895841,10897268-10898426
Length = 709
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = -3
Query: 178 YVGLSNNTW---LFNLSRTFPLDHXFFLALPPPD---PSXXFCVLXGCLAEAFASFLG 23
++G N+W L L P +LALP D P+ CVL GC AF+ G
Sbjct: 32 HMGRVCNSWRVALVKLKAPAPPPPLPWLALPESDDGLPATVSCVLSGCRTHAFSVLQG 89
>05_03_0438 - 14019214-14019723,14019876-14019918,14023196-14023422
Length = 259
Score = 27.5 bits (58), Expect = 4.1
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 213 LITPAVVSERLKVRGSLARRALIELMEKGLIKQVVQHHGQVIYTRATKGD 362
++TPA E+ + + A++ L+E E+ I+ +Q + Q+++ +K D
Sbjct: 167 VLTPAAYFEQHQFKLEKAKQRLVERRERKEIEATIQANRQLVHEEKSKLD 216
>01_03_0179 +
13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 143 LVTNFSFGPLXLLGFAATGSFL 78
+V + +FGPL LL F A G F+
Sbjct: 710 MVVSQTFGPLSLLAFTALGGFI 731
>09_04_0329 +
16726501-16726750,16726843-16726930,16727280-16727333,
16727590-16727739,16727884-16728015,16728279-16728423,
16728514-16728552,16728638-16728712,16728935-16728994,
16729120-16729184,16729519-16729609,16729806-16729820
Length = 387
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 302 ETFFHKFDECSSRQGTSDL*PF 237
E F H DE SSRQ SDL P+
Sbjct: 214 EIFLHLLDEYSSRQKGSDLFPW 235
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 234 IRQQV*LACTVGLPCTVSH-MWVYQTTPGCSTCHELFLWTTXSSWLCRHRI 85
I Q + L +G C + VY+ P S H+LF T +W R+ I
Sbjct: 399 IIQHINLVKLIGFCCEGGRRLLVYEHMPNRSLDHQLFQTNTTLTWNIRYEI 449
>03_05_0742 +
27310404-27310457,27311281-27311286,27311350-27311469,
27311597-27311695,27311787-27311795,27311843-27311980,
27312084-27312218,27312308-27312517,27312592-27312798,
27312891-27313010,27313079-27313198,27313279-27313401,
27313501-27313605,27313764-27313908,27314658-27315148,
27315236-27315268,27315556-27315637,27315747-27315907,
27316021-27316206,27316294-27316476,27316573-27316751,
27317009-27317105
Length = 1000
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 247 FNLSDTTAGVISLYCGTSLYSFSYVGL--SNNTWLFNLSRTFPLDHXFFL 104
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 843 FFVAQLIATLIAVYANWAFTSIKGIGWGWAGIVWLYNLVFYFPLDIIKFL 892
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 168 KPTYEKLYKEVPQYKLITPAVVSERL 245
KPT E+L K +PQ K++ AV E +
Sbjct: 39 KPTRERLEKLLPQIKVVLDAVDMEHI 64
>01_06_1624 + 38725452-38725537,38725823-38725844,38726194-38728038
Length = 650
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -3
Query: 292 SISSMSALLAREPRTFNLSDTTAGV---ISLYCGT 197
S S + R+P ++NL D TAG + L CG+
Sbjct: 173 SCSCLKGFSIRDPNSWNLGDQTAGCRRNVMLQCGS 207
>12_02_1263 +
27423411-27423464,27423985-27424104,27424200-27424298,
27424405-27424542,27424647-27424706,27424865-27425044,
27425132-27425338,27425415-27425534,27425609-27425728,
27425819-27425941,27426074-27426178,27426379-27426523,
27426967-27427131,27427228-27427466,27427553-27427585,
27427894-27427975,27428100-27428260,27428422-27428607,
27428700-27428882,27428969-27429147,27429386-27429482
Length = 931
Score = 26.2 bits (55), Expect = 9.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -3
Query: 247 FNLSDTTAGVISLYCGTSLYSFSYVGL--SNNTWLFNLSRTFPLDHXFFL 104
F ++ A +I++Y + S +G + WL+NL FPLD FL
Sbjct: 774 FLVAQLIATLIAVYADWAFTSIKGIGWGWAGIVWLYNLIFYFPLDIIKFL 823
>08_02_1171 +
24880363-24881355,24882553-24882702,24883505-24884210,
24885012-24885404,24885759-24885805,24886088-24886111
Length = 770
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 392 NLYHSLCDWIIALGRTRVDHLP 327
NL+H++ DW A +RV LP
Sbjct: 347 NLFHTITDWYSAYVSSRVTDLP 368
>06_03_1117 +
27750291-27750338,27751360-27751812,27751987-27752161,
27752227-27752551,27752705-27752786,27752820-27752889,
27753341-27753420,27753514-27753750
Length = 489
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 41 GFGQTAS*NTEXXGRIRWRQSQEEXVVQRKSS*QVEQPG 157
GFG S N+ +RWR + + + Q Q ++PG
Sbjct: 427 GFGIAISANSMLVEYLRWRSRRNQQLAQTVDDGQRQEPG 465
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,330,126
Number of Sequences: 37544
Number of extensions: 222855
Number of successful extensions: 627
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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