Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17f14
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    41   8e-06
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    41   8e-06
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 41.1 bits (92), Expect = 8e-06
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = +3

Query: 126 MSEKSSPIKY---FLCGGFGGVCTVLSGHPMDTIKVRLQTMPLPKP-GEVALYAGTWDCF 293
           MS  + P+ +   FL GG     +  +  P++ +K+ LQ   + K   E   Y G  DCF
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 294 KKTVQKEGFRGLYKGMSAPLTGVAPIFAISF 386
            +  +++GF   ++G  A +    P  A++F
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNF 91



 Score = 31.5 bits (68), Expect = 0.006
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 447 AELFAAGAFSGIFTTSIMAPGERIKCLLQIQQGG---NVPQKYNGMV 578
           A+ F AG  +   + + +AP ER+K LLQ+Q      +  Q+Y GM+
Sbjct: 11  AKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMI 57


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 41.1 bits (92), Expect = 8e-06
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = +3

Query: 126 MSEKSSPIKY---FLCGGFGGVCTVLSGHPMDTIKVRLQTMPLPKP-GEVALYAGTWDCF 293
           MS  + P+ +   FL GG     +  +  P++ +K+ LQ   + K   E   Y G  DCF
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 294 KKTVQKEGFRGLYKGMSAPLTGVAPIFAISF 386
            +  +++GF   ++G  A +    P  A++F
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFPTQALNF 91



 Score = 31.5 bits (68), Expect = 0.006
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 447 AELFAAGAFSGIFTTSIMAPGERIKCLLQIQQGG---NVPQKYNGMV 578
           A+ F AG  +   + + +AP ER+K LLQ+Q      +  Q+Y GM+
Sbjct: 11  AKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMI 57


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 506 GRHYGRRKYTRECSGGE 456
           G H+G+R   R C+G E
Sbjct: 381 GSHHGQRVMVRTCNGLE 397


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 518 DTFSGRHYGRRKYTRECSGGEKFCFR 441
           + F G  Y R K  R C   E+F ++
Sbjct: 479 ENFKGGMYLRLKARRACMNYERFTYK 504


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 518 DTFSGRHYGRRKYTRECSGGEKFCFR 441
           + F G  Y R K  R C   E+F ++
Sbjct: 479 ENFKGGMYLRLKARRACMNYERFTYK 504


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 396 GLGKKLIKNDEEQVLTKAELFAAGAF 473
           G+ +  ++ND+E     AEL   G F
Sbjct: 366 GMYQCFVRNDQESAQATAELKLGGRF 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,184
Number of Sequences: 438
Number of extensions: 4029
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)