Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17f11
(531 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 46 3e-06
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 46 4e-06
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 40 2e-04
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po... 40 2e-04
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 31 0.081
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 31 0.14
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 30 0.25
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 30 0.25
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 29 0.43
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.43
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 1.7
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ... 27 1.7
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 26 4.0
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 25 5.3
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 5.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 7.0
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 25 9.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 25 9.3
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 46.4 bits (105), Expect = 3e-06
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Frame = +3
Query: 261 GKSNAADAVVKEIKDKGGVAVADYNSVVEGEK-LIKT---AIDNFG-RIDILINNAGI-L 422
G++ A E++DK GV Y+ +E +I+T A++ G R+D++I NAGI +
Sbjct: 41 GRNKKALEYAAELRDKHGVQAKAYSCPIENRSAVIETTNQAVEELGGRLDVMIANAGIAI 100
Query: 423 RDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFR 530
S E W + ++L GA+ T AA F+
Sbjct: 101 PHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFK 136
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 46.0 bits (104), Expect = 4e-06
Identities = 22/70 (31%), Positives = 38/70 (54%)
Frame = +3
Query: 294 EIKDKGGVAVADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQ 473
+++D AD + + E I+ I G ID+LINNAG+ D F +++ + WD
Sbjct: 42 KVQDAALALQADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDV 101
Query: 474 AVHLKGAFKT 503
++ L+G + T
Sbjct: 102 SLVLRGNYLT 111
>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 236
Score = 40.3 bits (90), Expect = 2e-04
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +3
Query: 315 VAVADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGA 494
V D N+ +K ++ AI +FGRID+L+NNAG TE+ I ++ GA
Sbjct: 18 VTQLDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGA 77
Query: 495 FKTTHAAWETFR 530
+ A FR
Sbjct: 78 LEVIKAITPIFR 89
>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 236
Score = 40.3 bits (90), Expect = 2e-04
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +3
Query: 315 VAVADYNSVVEGEKLIKTAIDNFGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGA 494
V D N+ +K ++ AI +FGRID+L+NNAG TE+ I ++ GA
Sbjct: 18 VTQLDVNNFSSIKKSVEKAISHFGRIDVLLNNAGYSVYSPLESTTEEQIHNIFNTNVFGA 77
Query: 495 FKTTHAAWETFR 530
+ A FR
Sbjct: 78 LEVIKAITPIFR 89
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 31.5 bits (68), Expect = 0.081
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 381 FGRIDILINNAGILRDKSFTKMTEQDWDLIQAVHLKGAFKTTHAAWETFR 530
F IDI++ N GI KS MT +++ V+L G F H A F+
Sbjct: 96 FDTIDIVVPNNGICTGKSAIDMTYEEFANEINVNLLGVFNVAHNAGPIFQ 145
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 30.7 bits (66), Expect = 0.14
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 348 GEKLIKTAIDNFGRIDILINNAGIL 422
G+ I+TAI FG++D +I NAG+L
Sbjct: 65 GKASIETAIKKFGKLDSVILNAGVL 89
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 29.9 bits (64), Expect = 0.25
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 357 LIKTAIDNFGRIDILINNAGILR-DKSFTKMTEQDWDLIQAVHLKGAFKTTHAA 515
L+ A+ G ID+L+NN + +S + ++ WDL ++ F T AA
Sbjct: 111 LVDFALKKLGWIDVLVNNIAYQQVAQSIEDIDDEQWDLTFKTNIFSFFWVTKAA 164
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 29.9 bits (64), Expect = 0.25
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +3
Query: 258 AGKSNAADAVVKEIKDKGGVAVADYNSVVEGEKLIKTAIDN----FGRIDILINNAGI 419
A + + + + KE++ K V+V V K I I++ F ID+LINNAG+
Sbjct: 38 ARRFSTVEEIAKELESKYEVSVLPLKLDVSDLKSIPGVIESLPKEFADIDVLINNAGL 95
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 29.1 bits (62), Expect = 0.43
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3
Query: 327 DYNSVVEGEKLIKTAIDNFGRIDILINNAG 416
D V E K A FG +DI+INNAG
Sbjct: 55 DVTDVKSVETAFKDAKRRFGNVDIVINNAG 84
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.43
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = -3
Query: 394 SILPKLSIAVFISFSPSTTEL*SATATPPLSLISLTTASAALDFPAPSLALPRSLTTTLA 215
S+LP S++ S ++T SA++T PLS ++ TTA++A P S+ + + +
Sbjct: 413 SVLPTSSVSSTPLSSANSTTATSASST-PLSSVNSTTATSASSTPLSSVNSTTATSASST 471
Query: 214 P 212
P
Sbjct: 472 P 472
Score = 27.1 bits (57), Expect = 1.7
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -3
Query: 394 SILPKLSIAVFISFSPSTTEL*SATATPPLSLISLTTASAALDFPAPSLALPRSLTTT 221
S+LP + + S ++T SA++TP S+ S TT SA+ P S++ S T T
Sbjct: 280 SLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSAS-STPLSSVSSANSTTAT 336
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = -3
Query: 394 SILPKLSIAVFISFSPSTTEL*SATATPPLSLISLTTASAALDFP 260
S+LP S++ S ++T SA++T PL+ ++ TTA++A P
Sbjct: 527 SVLPTSSVSSTPLSSANSTTATSASST-PLTSVNSTTATSASSTP 570
Score = 25.8 bits (54), Expect = 4.0
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = -3
Query: 361 ISFSPSTTEL*SATATPPLSLISLTTASAALDFPAPSLALPRSLTTTLAP 212
+S + STT ++T++ PLS ++ TTA++A P S+ + + + P
Sbjct: 327 VSSANSTTA--TSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTP 374
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -3
Query: 487 FKWTAWIKSQSCSVILVKLLSRRMPALLIRISILPKLSIAVFISFSPSTTEL*SATATPP 308
F+W +W+ SQ S L S + + + P + +F +FS +T L SA P
Sbjct: 317 FEWGSWVSSQDTSKNSSNLASASVDDVSEESQVEP--NTLIFQNFSSPSTSL-SAPKDTP 373
Query: 307 LSLISLTTA 281
+ S+ T+
Sbjct: 374 AVIQSINTS 382
>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -3
Query: 502 VLKAPFKWTAWIK 464
VLKAPF W+AW++
Sbjct: 200 VLKAPFFWSAWLE 212
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 4.0
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -3
Query: 382 KLSIAVFISFSPSTT--EL*SATATPPLSLISLTTASAALDFPAPSLALPRSLTT 224
K +A +++ SPS + E + +ATP + L A + FP P+L +P TT
Sbjct: 12 KAVLAYWLNRSPSISKEEYKTVSATPAVQL-------AQIQFPLPTLVIPAESTT 59
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 50 YRFSLSASIVNYKLIISFLYIAEDGSIAFRRTCSSSN 160
YR L +S+ + I+ F+Y+A +RT S N
Sbjct: 102 YRDILRSSLEHRPAILRFIYLAASRETLIKRTTSRKN 138
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 358 SFSPSTTEL*SATATPPLSLISLTTASAALDFPA 257
S S S + S+++TP +S I TT+S + D P+
Sbjct: 114 SNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPS 147
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -3
Query: 358 SFSPSTTEL*SATATPPLSLISLTTASAALDFPAPSLALPRSLTTTL 218
++S S L ++ +P IS T +S++ +PS+AL S TTT+
Sbjct: 290 TYSTSGPNLTTSNTSPQ---ISSTISSSSFIVESPSVALSTSSTTTI 333
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 9.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 276 ADAVVKEIKDKGGVAVADYNSVVEGEKLIKTAIDNFGRIDI 398
A+A+VK ++D + V DY+ +V + L + D F I I
Sbjct: 141 AEAIVKNLQDGDLIWVQDYHLMVLPQMLRELIGDKFKDIKI 181
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 9.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -3
Query: 322 TATPPLSLISLTTASAALDFPAPSLALPRSLTTTLAP 212
T+TPP+ S SA PAPS +P + AP
Sbjct: 1047 TSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP 1083
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 24.6 bits (51), Expect = 9.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 249 RDGAGKSNAADAVVKEIKDKGGV 317
+D GK A + EIK KGGV
Sbjct: 310 KDPMGKQEAIAEIQDEIKQKGGV 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,371
Number of Sequences: 5004
Number of extensions: 34727
Number of successful extensions: 121
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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