Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17f09
         (407 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    29   1.7  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    29   1.7  
AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical...    28   2.3  
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical p...    26   9.1  

>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
            protein.
          Length = 1492

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -2

Query: 250  QSRQVLPMVVQGAHCGYQGADAIHGGIQG 164
            Q  Q      QGAH G QGA   H G QG
Sbjct: 1004 QGEQFGAQGAQGAHFGAQGAQGAHFGAQG 1032


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
            protein Y53H1C.2a protein.
          Length = 1512

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -2

Query: 250  QSRQVLPMVVQGAHCGYQGADAIHGGIQG 164
            Q  Q      QGAH G QGA   H G QG
Sbjct: 1024 QGEQFGAQGAQGAHFGAQGAQGAHFGAQG 1052


>AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.1 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -1

Query: 200 PGSGCDPWRYPRVD--CAIVPASPTAGTT 120
           PGS CDP RY  +D  C++ P + T  TT
Sbjct: 179 PGSACDPDRY-NIDGLCSLNPPTTTTTTT 206


>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical protein
            ZC84.6 protein.
          Length = 1474

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 249  CTTKQVCTKVGGIQ-RACLDPTLPYCNLGECSATPAEGCEP 368
            CT     T   G Q  A +D ++ YC  G+   T ++GC P
Sbjct: 890  CTIGHFVTCPAGFQCMAQIDGSMGYCCKGQPQLTASDGCPP 930


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 246 DCTTKQVCTKVGGIQRACLDPTLPYCNLGECSATPAEGCEPASGASVT 389
           +C     CT +GG     ++P  P  +   C  +P   C   SGAS T
Sbjct: 693 ECPPGYGCTPLGGCCLLSMEPVCPTRSNAVCQCSPNNVC--PSGASCT 738


>U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical
           protein F55G1.13 protein.
          Length = 616

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 307 GSRHALCIPPTFVQTCLVVQSRQVLPMVVQGAHCGYQGADAIHGGIQGLT 158
           GS + +C P  F ++CL   S +++  ++   + G  G D +    Q LT
Sbjct: 509 GSYYCVCSPNMFGKSCLFSNSDKIIYQILNATY-GDLGPDKLDEMAQELT 557


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,196,367
Number of Sequences: 27780
Number of extensions: 185694
Number of successful extensions: 516
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)