Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17f06
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   1.5  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   1.5  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    24   6.1  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    24   8.0  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +2

Query: 110 PDVGPALVEAPIVPSP--VHVGPLVPG-QLTPLVHILININDAASATPVESVEPEQSNVE 280
           P V P + EAP VP P    V P VP     P V ++     +    P   V PE  +V 
Sbjct: 592 PPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEA-PSVPQPPAAPVVPEVPSVP 650

Query: 281 EK 286
           ++
Sbjct: 651 QR 652



 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 110 PDVGPALVEAPIVPSPVHVGPLVP 181
           P V P   E P VP P  V P+VP
Sbjct: 577 PPVAPVAPEVPSVPQP-PVAPVVP 599


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 119 GPALVEA-PIVPSPVHVGPLVPGQLTPLVHILINI 220
           G AL+   PIV S  H+ P   G+L P +H  +++
Sbjct: 781 GAALLSKFPIVNSTHHLLPSPQGELAPAIHATLDV 815


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 354 SATITGXGT-MMAGSAMITGETAGFSSTFDCSGSTLSTGVALAAS 223
           ++ IT   T +   S+ ++  T  +S+    +GST +TG A  +S
Sbjct: 247 TSIITSTSTPVTVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSS 291


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 117 SVLP*SKLPSSHPQSTSDPSFL 182
           S +P  +LPSS+P  +SD S++
Sbjct: 10  STVPGDELPSSYPVFSSDFSYI 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,021,090
Number of Sequences: 5004
Number of extensions: 15341
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)