Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17f06
         (356 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0972 + 7672048-7672390,7672546-7672709,7672864-7672961,767...    31   0.20 
05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361     27   4.3  
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600           27   4.3  
03_06_0188 + 32212297-32212746                                         27   5.7  
03_06_0187 + 32209924-32210634                                         27   5.7  
10_08_0666 - 19691985-19692216,19692327-19692404,19692508-196928...    26   7.6  
08_02_0767 + 21004373-21004545,21004656-21004711,21004800-210048...    26   7.6  
03_05_0524 - 25181432-25181483,25181565-25181691,25181776-251818...    26   7.6  

>01_01_0972 +
           7672048-7672390,7672546-7672709,7672864-7672961,
           7673040-7673361,7674021-7675220
          Length = 708

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = -3

Query: 333 GTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTRGPTWT 157
           GT+ +  AM TG TAGF  +F+ S S L        S  +I+ WTR ++  G     +T
Sbjct: 44  GTLFSFMAMRTGLTAGFVPSFNMSASLL--------SFFIIKSWTRLMARCGVASQPFT 94


>05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361
          Length = 760

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 288 GFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTRGPTWTGDG 148
           G+  T+   G++ S G A  +SL L R W+   S      P W  +G
Sbjct: 634 GWGGTWGSGGTSSSLGAA--SSLGLFRGWSSSESSSSLSRPDWRTNG 678


>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
          Length = 585

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = -3

Query: 345 ITGXGTMMAGSAMITGE-TAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTRG 169
           +   G  M G  + +G  +A   +T        S G   AA  M + +   G++  G+ G
Sbjct: 142 VPSGGLQMDGGGLPSGGLSAVMLTTGGAHAGGASGGELKAAFHMPVVVPGSGLAGDGSSG 201

Query: 168 PTWTGDGTMGASTRAGPTSGLS 103
               G G M ++T +GPT+G S
Sbjct: 202 LA-RGSGAMFSNTSSGPTAGSS 222


>03_06_0188 + 32212297-32212746
          Length = 149

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 110 PDVGPALVEAPIVPSPVHVGPLVPG 184
           P VGP +   P++P    + P++PG
Sbjct: 71  PVVGPGIPFVPVIPGVPVIVPIIPG 95


>03_06_0187 + 32209924-32210634
          Length = 236

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 110 PDVGPALVEAPIVPSPVHVGPLVP 181
           P VGP +   P +P    VGP +P
Sbjct: 47  PAVGPTIPAIPTIPGVPAVGPTIP 70



 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 110 PDVGPALVEAPIVPSPVHVGPLVP 181
           P VGP +   P +P    VGP +P
Sbjct: 82  PAVGPTIPAIPTIPGVPAVGPTIP 105


>10_08_0666 -
           19691985-19692216,19692327-19692404,19692508-19692837,
           19692913-19693158,19693224-19693483,19694469-19695023
          Length = 566

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 249 STGVALAASLMLIRMWTRGVSCPGTRGPTWTGDGTMGASTRA 124
           S+G A AA+   +  +      P +RG  W G+   GA   A
Sbjct: 95  SSGPAPAAAGTTVSRYRAPFPWPASRGVVWAGNSARGAKAAA 136


>08_02_0767 +
           21004373-21004545,21004656-21004711,21004800-21004882,
           21004942-21005112,21005806-21005997
          Length = 224

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -3

Query: 333 GTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSC 184
           G  +AG +M + + A  +S  D        GV  +  L++ R+W +   C
Sbjct: 18  GVQLAGRSMYSDDEAVKTSIIDPLAREPQEGVGTSRRLLIRRLWQQRPPC 67


>03_05_0524 -
           25181432-25181483,25181565-25181691,25181776-25181826,
           25182159-25182314,25182405-25182905,25182999-25183713,
           25183797-25183867,25183974-25184103,25185706-25186167
          Length = 754

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 95  GHYESPDVGPALVEAPIVPSPVHVGPLVPGQLTPL 199
           G    P + PA VE P++ +P+   P  P  +TPL
Sbjct: 355 GSVMPPPLPPATVE-PVISAPMVEPPPPPAMITPL 388


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,009,557
Number of Sequences: 37544
Number of extensions: 113422
Number of successful extensions: 409
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)