Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17f06
         (356 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    32   0.10 
AL110498-3|CAB54470.1|  846|Caenorhabditis elegans Hypothetical ...    29   0.95 
AF125459-13|AAD12833.1|  605|Caenorhabditis elegans Hypothetical...    28   1.7  
U88314-7|AAF99887.2|  294|Caenorhabditis elegans Pharyngeal glan...    28   2.2  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AC025723-1|AAK29934.1|  184|Caenorhabditis elegans Hypothetical ...    27   5.1  
AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical ...    26   6.7  
AL023851-2|CAA19555.2|  209|Caenorhabditis elegans Hypothetical ...    26   6.7  
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    26   8.9  
U41034-4|AAY43995.1|  385|Caenorhabditis elegans Hypothetical pr...    26   8.9  
AF016449-6|AAG23999.1|  331|Caenorhabditis elegans Seven tm rece...    26   8.9  

>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
            protein H02F09.3 protein.
          Length = 1275

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = -3

Query: 354  SATITGXGTMMAGSAMITGETA-GFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPG 178
            SA+     T  +  + ITG T  G S+    +GST++ G  ++ S M     T GVS   
Sbjct: 917  SASTGSTDTPGSTESTITGSTVTGESTVSGSTGSTITEGSTISESTMT----TVGVST-- 970

Query: 177  TRGPTWTGDGTMGASTRAGPT 115
              G T TG+ T+  STR+  T
Sbjct: 971  --GSTITGESTVSGSTRSTVT 989


>AL110498-3|CAB54470.1|  846|Caenorhabditis elegans Hypothetical
           protein Y64G10A.6 protein.
          Length = 846

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 104 ESPDVGPALVEAPIVPSPVHVGPLVPGQLTPLVHILINI-NDAASATPVESVEPEQSNVE 280
           +S DV   L +    P P+HV P  P  L P    +     D      V+SVE + + +E
Sbjct: 722 DSEDV-KLLEDVKCAPGPIHVEPTEPEVLEPAEEPMEEAEEDEEDEDDVDSVEGQTARIE 780

Query: 281 E 283
           E
Sbjct: 781 E 781


>AF125459-13|AAD12833.1|  605|Caenorhabditis elegans Hypothetical
           protein Y25C1A.3 protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -3

Query: 354 SATITGXGTMMAGSAMITGETA--GFSSTFDCSGSTLSTGVALAAS 223
           + T  G  T    +   T  TA  G ++T    GST STGV +A+S
Sbjct: 323 ATTAAGGSTASTAAGGSTASTAAGGSTATTAAGGSTASTGVTVASS 368


>U88314-7|AAF99887.2|  294|Caenorhabditis elegans Pharyngeal gland
           toxin-relatedprotein 1 protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = -3

Query: 186 CPGTRGPTWTGDGTMGAST----RAGPTSGLS*CP 94
           CP T G   T   T  +ST    R  PT+G+S CP
Sbjct: 171 CPRTCGRCSTSSSTTSSSTTCADRVNPTTGVSDCP 205


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = -3

Query: 354  SATITGXGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGV---SC 184
            S   +  GTM + S+   G T   SST   + S   + V + +S       T GV   S 
Sbjct: 1513 STAPSSTGTMSSTSSGTVGSTISESSTTASASSQTGSTVTMGSSS------TSGVSTSSA 1566

Query: 183  PGTRGPTWTGDGTMGASTRAGPTSGL 106
              T+    T  G+   ST A  T+GL
Sbjct: 1567 SSTQPQMSTSQGSSAGSTVASSTAGL 1592



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = -3

Query: 354  SATITGXGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGV---SC 184
            S   +  GTM + S+   G T   SST   + S   + V + +S       T GV   S 
Sbjct: 1596 STVPSSTGTMGSTSSGTVGSTISESSTTASASSQTGSTVTMGSSS------TSGVSTSSA 1649

Query: 183  PGTRGPTWTGDGTMGASTRAGPTSGL 106
              T+    T  G+   ST A  T+GL
Sbjct: 1650 SSTQPQMSTSQGSSAGSTVASSTTGL 1675



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
 Frame = -3

Query: 354  SATITGXGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGV---SC 184
            S   +  GTM + S+   G T   SST   + S   + V + +S       T GV   S 
Sbjct: 1835 STVPSSTGTMGSTSSGTVGSTISESSTTASASSQTGSTVTMGSSS------TSGVSTSSA 1888

Query: 183  PGTRGPTWTGDGTMGASTRAGPTSGL 106
              T+    T  G+   ST A  T+GL
Sbjct: 1889 SSTQPQMSTSQGSSAGSTVASSTAGL 1914


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 28/73 (38%), Positives = 34/73 (46%)
 Frame = -3

Query: 330 TMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTRGPTWTGD 151
           T  A SA     T G S+T   SGST ST      S  L    + G S   T GP+ T  
Sbjct: 350 TSRASSASDDPTTTGPSTT---SGSTASTTSGSLFSTSLGSSQSPGSSVSTTPGPS-TIS 405

Query: 150 GTMGASTRAGPTS 112
           G +  ST +GPT+
Sbjct: 406 G-ISQSTTSGPTT 417



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
 Frame = -3

Query: 354 SATITGXGTMMAGSAMIT--GETAGFSSTFDC-SGSTLSTGVALAASLMLIRMWTRGVSC 184
           SA+ T   +  +GS + T  G++    +T    SG T S+G +  +   L    T G S 
Sbjct: 468 SASTTSGPSTSSGSTVSTTSGQSTSSGTTKSTTSGPTTSSGPSTVSERTLST--TSGPST 525

Query: 183 PGTRGPTWTGDGTMGASTRAGPTSG 109
             T GP+ T   T+  +  A  TSG
Sbjct: 526 --TSGPSTTSGSTVSTTPGASTTSG 548



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 24/83 (28%), Positives = 32/83 (38%)
 Frame = -3

Query: 351 ATITGXGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTR 172
           +T  G  T+   S   T      S     SGST+S       S       T G +   T 
Sbjct: 396 STTPGPSTISGISQSTTSGPTTTSEPSTTSGSTVSD--TSGPSTTSGPSTTLGTTQSTTS 453

Query: 171 GPTWTGDGTMGASTRAGPTSGLS 103
           GP+ T   T+  ++ A  TSG S
Sbjct: 454 GPSTTPGSTISTTSSASTTSGPS 476


>AC025723-1|AAK29934.1|  184|Caenorhabditis elegans Hypothetical
           protein Y54F10AM.7 protein.
          Length = 184

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = -3

Query: 345 ITGXGTMMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPG--TR 172
           +T  G    G A +   T G S T   +   L+T       L  + + T G++  G  T+
Sbjct: 58  LTTMGLTTMGLATMGLTTMGLS-TIGLTTMGLTTVGLTTMGLTTMGLTTMGLATMGLTTK 116

Query: 171 GPTWTGDGTMGASTRAGPTSGLS 103
           G T  G  TMG +T    T GL+
Sbjct: 117 GLTTVGLTTMGLTTMGLTTMGLA 139


>AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical
           protein Y54E2A.8 protein.
          Length = 485

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 104 ESPDVGPALVEAPIVPSPVHVGPLVPGQLTPLVHILININDAASATPVESVE 259
           E P     +  AP+ P P +  P VP +  P+  + IN  ++    P + +E
Sbjct: 185 EIPATPSPIFVAPLPPPPAYTTPDVPPE--PMCSLRINFGNSLKIPPRKIIE 234


>AL023851-2|CAA19555.2|  209|Caenorhabditis elegans Hypothetical
           protein Y68A4B.2 protein.
          Length = 209

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 20/56 (35%), Positives = 22/56 (39%)
 Frame = -3

Query: 327 MMAGSAMITGETAGFSSTFDCSGSTLSTGVALAASLMLIRMWTRGVSCPGTRGPTW 160
           MMAG AM  G   G   T  C G  ++       S      WT G S  GT G  W
Sbjct: 95  MMAGLAMTGGHWLGARRTAACIGQLVTATCTRLNSF----EWTDG-SATGTDGFNW 145


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 122 PALVEAPIVPSPVHVGPLVP 181
           PA   AP VP+P HV PL P
Sbjct: 422 PAPTSAP-VPTPRHVAPLAP 440


>U41034-4|AAY43995.1|  385|Caenorhabditis elegans Hypothetical
           protein M02D8.7 protein.
          Length = 385

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 110 PDVGPALVEAPIVPSPVHV 166
           P +GP L++AP  P+P  V
Sbjct: 118 PQMGPPLLQAPFFPNPFFV 136


>AF016449-6|AAG23999.1|  331|Caenorhabditis elegans Seven tm
           receptor protein 40 protein.
          Length = 331

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 125 ALVEAPIVPSPVHVGPLVPGQLTPLVHILININDAASATPVESVEPEQS 271
           AL+   +VP+ + V P +P  +TP  +I I  N A +   ++   P  S
Sbjct: 248 ALLVQILVPAILFVLPSLPFLITPFFNIEIGFNPALNCALLQIYPPIDS 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,747,310
Number of Sequences: 27780
Number of extensions: 92675
Number of successful extensions: 423
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)