Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17f02
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0973 + 29825057-29825344,29825447-29825552,29825750-298258... 31 0.76
01_05_0157 + 18699566-18699853,18699956-18700061,18700268-187007... 31 0.76
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 29 2.3
11_06_0016 - 19284810-19284926,19285527-19286879 28 4.1
10_05_0075 + 8869087-8869413,8869823-8870053,8871145-8871267,887... 28 5.4
08_01_0432 + 3782594-3783027,3783678-3783759,3784067-3784117,378... 27 9.4
07_03_1515 - 27348999-27349559,27349738-27350070,27350461-273505... 27 9.4
02_05_0791 + 31773175-31773308,31773403-31773561,31775867-317759... 27 9.4
>04_04_0973 +
29825057-29825344,29825447-29825552,29825750-29825845,
29826335-29826690,29826980-29827721,29828064-29828083
Length = 535
Score = 30.7 bits (66), Expect = 0.76
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = +1
Query: 241 YRAGQTTLRYFDRALWVVEKCARWAVPPPLDQDERPQPELIRPLPWVFFLMMLIALRITR 420
YR+G+T R+F+ L V + + + P P PE W +F L AL T
Sbjct: 52 YRSGETVSRHFNLCLLAVLRLHQLLLKKP-----EPIPEDTTDDRWKYFKNCLGALDGTH 106
Query: 421 ETISLANLIMGKPPLRSADVV 483
+++ I G+ R D+V
Sbjct: 107 IKVTVPTRIKGRYMSRKGDIV 127
>01_05_0157 +
18699566-18699853,18699956-18700061,18700268-18700712,
18700852-18700880,18701014-18701207,18701497-18702211,
18702552-18702571
Length = 598
Score = 30.7 bits (66), Expect = 0.76
Identities = 23/81 (28%), Positives = 36/81 (44%)
Frame = +1
Query: 241 YRAGQTTLRYFDRALWVVEKCARWAVPPPLDQDERPQPELIRPLPWVFFLMMLIALRITR 420
YR+G+T R+F+ L V + + + P P PE W +F L AL T
Sbjct: 52 YRSGETVSRHFNLCLLAVLRLHQLLLKKP-----EPIPEDTTDDRWKYFKNCLGALDGTH 106
Query: 421 ETISLANLIMGKPPLRSADVV 483
+++ I G+ R D+V
Sbjct: 107 IKVTVPTRIKGRYRSRKGDIV 127
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 286 WVVEKCARWAVPPPLDQDERPQPELIRPLP 375
W + KC R+A PPP P P + P P
Sbjct: 37 WRLAKCPRFAPPPPQPTLPPPPPRTLPPPP 66
>11_06_0016 - 19284810-19284926,19285527-19286879
Length = 489
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 319 PPPLDQDERPQPELIRPLPWVFFLMMLIAL 408
PPP RP P L LP+ F+L ++L
Sbjct: 90 PPPPPPPPRPAPSLASALPFWFYLTAAVSL 119
>10_05_0075 +
8869087-8869413,8869823-8870053,8871145-8871267,
8871873-8872091
Length = 299
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 258 YVTVFR*SIVGGREMCEMGRASTFGSRRAPATRTDPPSALGI 383
+ T+++ S GGR C G + G RR P R S +GI
Sbjct: 89 HATIWQ-SSSGGRRRCGRGAVESLGLRRPPPRRHPRVSDIGI 129
>08_01_0432 +
3782594-3783027,3783678-3783759,3784067-3784117,
3784279-3784514,3785008-3785058,3790905-3791106,
3791695-3791977,3792617-3792687
Length = 469
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 301 CARWAVPPPLDQDERPQPELIR 366
CA WAV PP+D P P+ +R
Sbjct: 59 CAVWAVEPPIDA-AAPLPQYVR 79
>07_03_1515 -
27348999-27349559,27349738-27350070,27350461-27350574,
27350911-27351141,27351231-27351686
Length = 564
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 241 YRAGQTTLRYFDRALWVVEKCARWAVPPP 327
YR+G+T RYF+ L V + + + PP
Sbjct: 105 YRSGETVSRYFNLVLHAVGELRKELIRPP 133
>02_05_0791 +
31773175-31773308,31773403-31773561,31775867-31775927,
31776120-31776407
Length = 213
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 284 NALSKYRNVVWPAR*LTACSAKV*SISFIR 195
N+ S YR +W A+ + CSA +SF+R
Sbjct: 130 NSTSSYRRRLWKAQYIVFCSADDGVLSFLR 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,432,561
Number of Sequences: 37544
Number of extensions: 271151
Number of successful extensions: 763
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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