Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17f02
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   5.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 131 HSYYPFLYSNSIPNF 175
           H+Y PF+ SNS+ NF
Sbjct: 237 HNYPPFMLSNSL-NF 250


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 131 HSYYPFLYSNSIPNF 175
           H+Y PF+ SNS+ NF
Sbjct: 237 HNYPPFMLSNSL-NF 250


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 315 GPSRTFLDHPQCSIEIP*RSLASAV 241
           GP   FL +P   +E+P  S+ S +
Sbjct: 355 GPGLAFLVYPSAVLELPGSSIWSCL 379


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 315 GPSRTFLDHPQCSIEIP*RSLASAV 241
           GP   FL +P   +E+P  S+ S +
Sbjct: 408 GPGLAFLVYPSAVLELPGSSIWSCL 432


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = -2

Query: 276 IEIP*RSLASAVADRVLCQSLKHFLYQVHVW 184
           + I  + + SA+  R   ++L+H +  +H W
Sbjct: 11  LSIACQDVTSAIHQRKSSKNLEHSMNVIHEW 41


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 313 PISHISRPPTMLYRN 269
           P  HI RP  +LY N
Sbjct: 106 PSDHIWRPDIVLYNN 120


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 313 PISHISRPPTMLYRN 269
           P  HI RP  +LY N
Sbjct: 106 PSDHIWRPDIVLYNN 120


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 313 PISHISRPPTMLYRN 269
           P  HI RP  +LY N
Sbjct: 102 PSDHIWRPDIVLYNN 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,907
Number of Sequences: 438
Number of extensions: 2747
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)