Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e24
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   4.1  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    26   4.1  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    25   5.4  
SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing] |Schizos...    25   5.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   7.2  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   9.5  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    25   9.5  

>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 126 RSQPSNLSTKFNSNWTSVF 182
           +S+PS+ S+ F SNW+++F
Sbjct: 147 KSRPSSQSSIFLSNWSTIF 165


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 102 TSRREV*FRSQPSNLSTKFNSNWTSVFRMFPLRQVIATV 218
           TS   +   S+PSNLST  +   T+ +  F +RQ ++ +
Sbjct: 138 TSADSISMESRPSNLSTSLSK--TTSYPQFQVRQFVSPI 174


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 378 HQVLCLMHLTIPSSDCLPEVSAWLMLLYRHYQLPSLLKDLYLLTLI 241
           H +  ++ LT+P S  LP +   +    R + LP+L   +  L LI
Sbjct: 121 HDIAQILLLTLPFSHALPLMEHLVFYRLRDFMLPTLDGTVKQLQLI 166


>SPAP7G5.02c |gua2||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 291 HYQLPSLLKDLYLLTLIGMLELYSVQLQLLGE 196
           H+ +  LLKD+ L  +  + EL+  +++ LGE
Sbjct: 371 HHNVGGLLKDMKLKLIEPLRELFKDEVRALGE 402


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +3

Query: 330  NSLNLELLDALGKALDDVSKNKSRGVVLTSSSPTVFSAGLDIMEMYKPDIKKS 488
            NS  +E ++++  +LDD S   +  V    +   + S  L +ME  K  ++++
Sbjct: 1455 NSSLMEKIESINSSLDDKSFELASAVEKLGALQKLHSESLSLMENIKSQLQEA 1507


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 339 NLELLDALGKALDDVSKNKSRGVVLTSS 422
           NL  +  L  ALD V  N S+GVVL S+
Sbjct: 24  NLLYVIILSAALDLVGANVSKGVVLLSN 51


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 44  YITLIYLK*CKFFICKHKAYF 106
           Y   +YL  CKF IC    YF
Sbjct: 99  YYLSLYLPSCKFEICSTNQYF 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,877
Number of Sequences: 5004
Number of extensions: 41751
Number of successful extensions: 121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)