Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e24
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908     41   5e-04
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459...    40   0.001
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316...    40   0.001
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716...    40   0.002
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018...    34   0.062
10_08_0590 + 19037115-19037485,19037814-19037916,19038199-190382...    28   4.1  
03_01_0180 + 1456182-1456359,1456444-1456520,1456570-1456692,145...    28   5.4  
04_01_0620 - 8151065-8151791,8152246-8152418                           27   7.2  
01_06_1417 - 37189068-37190321                                         27   9.5  

>06_03_0633 + 22960514-22960619,22961402-22961503,22961850-22961908
          Length = 88

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
 Frame = +3

Query: 282 VDNDGIATLTMQRPP-VNSLNLELLDALGKA-LDDVSKNKS-RGVVLTSSSPTVFSAGLD 452
           V  +G+A +T+ RP  +N++NLE+ D   KA LD+   N S + V++ SSSP  FSAG D
Sbjct: 14  VTPNGVAVITLDRPKALNAMNLEM-DLRYKAFLDEWETNPSVKCVLVESSSPRAFSAGGD 72

Query: 453 IMEM 464
           +  +
Sbjct: 73  VKRL 76


>05_04_0012 +
           17145112-17145205,17145681-17145752,17145832-17145911,
           17146059-17146175,17146282-17146363,17147086-17147141,
           17147258-17147560,17147658-17147744,17148118-17148292,
           17148370-17148491,17149028-17149191,17149277-17149531,
           17150419-17150540,17150656-17150777,17151302-17151450,
           17151565-17151703,17151831-17151866
          Length = 724

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = +3

Query: 282 VDNDGIATLTMQRPPVNSLNLELLDALGKALDDVSKNKSRGVVLTSSSPTVFSAGLDI 455
           V  DG+A +T+  PPVN+L+L+++ +L +   +  +      ++ + +   FS G DI
Sbjct: 10  VRRDGVAVITVSNPPVNALSLDVIASLQRDYGEALRRSDVKAIVLTGAKGRFSGGFDI 67


>05_01_0400 -
           3159370-3159385,3159599-3159703,3159972-3160006,
           3160134-3160272,3160457-3160605,3161052-3161173,
           3161296-3161417,3161779-3162033,3162108-3162271,
           3162311-3162489,3162593-3162767,3162916-3163002,
           3163144-3163446,3163539-3163594,3163813-3163894,
           3163972-3164039,3164779-3164835,3164926-3164991,
           3165121-3165192,3167363-3167459
          Length = 782

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 18/61 (29%), Positives = 34/61 (55%)
 Frame = +3

Query: 273 DLAVDNDGIATLTMQRPPVNSLNLELLDALGKALDDVSKNKSRGVVLTSSSPTVFSAGLD 452
           ++ V   G+A +T+  PPVN+L++ +L +L    ++  +      ++ +    VFS GLD
Sbjct: 8   EMEVRPGGVALITISNPPVNALSIHVLYSLKDHYEEALRRNDVKAIVVTGKGGVFSGGLD 67

Query: 453 I 455
           I
Sbjct: 68  I 68


>01_03_0216 +
           13870364-13870472,13871406-13871477,13871603-13871668,
           13871767-13871823,13871917-13871984,13872068-13872149,
           13872445-13872500,13872645-13872947,13873042-13873128,
           13873199-13873373,13873481-13873602,13873689-13873852,
           13873925-13874179,13874312-13874433,13874542-13874663,
           13875111-13875259,13875346-13875484,13875715-13875750
          Length = 727

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
 Frame = +3

Query: 273 DLAVDNDGIATLTMQRPPVNSLNLELLDALGK-ALDDVSKNKSRGVVLTSSSPTVFSAGL 449
           ++ V  DG+A +T+  PPVNSL++++L +L +   + + +N  + +V+T      FS G 
Sbjct: 12  EMEVGADGVAVITICNPPVNSLSIDVLLSLKENYAEALRRNDVKAIVVTGKGGK-FSGGF 70

Query: 450 DI 455
           DI
Sbjct: 71  DI 72


>02_02_0418 +
           10000744-10000840,10000952-10001023,10001786-10001848,
           10001952-10002008,10002159-10002226,10002327-10002408,
           10002517-10002572,10002934-10003236,10003638-10003724,
           10004454-10004628,10004813-10004934,10005171-10005334,
           10006201-10006455,10006979-10007100,10007220-10007341,
           10007452-10007600,10007649-10007652
          Length = 665

 Score = 34.3 bits (75), Expect = 0.062
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +3

Query: 270 IDLAVDNDGIATLTMQRPPVNSLNLELLDAL-GKALDDVSKNKSRGVVLTSSSPTVFSAG 446
           + + V  DG+A +T+  PPVN+L+  ++  L  K  + + ++  + +VLT +    F  G
Sbjct: 7   VTMEVGADGVAVVTICNPPVNALHPIIIQGLKEKYAEAMDRDDVKAIVLTGAGGK-FCGG 65

Query: 447 LDI 455
            DI
Sbjct: 66  FDI 68


>10_08_0590 +
           19037115-19037485,19037814-19037916,19038199-19038208,
           19038305-19038435,19038881-19038901
          Length = 211

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = -3

Query: 309 LMLLYRHYQLPSLLKDLYLLTLIGML-ELYSVQLQLLGEEETF 184
           LM L  +  +P LLKD Y+L ++G+  +L + +   L EE+ +
Sbjct: 136 LMALRHNPSIPCLLKDTYILCMLGLPGKLLNCRSVTLWEEKNY 178


>03_01_0180 +
           1456182-1456359,1456444-1456520,1456570-1456692,
           1456783-1456896,1457580-1457666,1458040-1458179,
           1458253-1458340,1459125-1459198,1461147-1461340,
           1461430-1461632,1461955-1462001,1462084-1462336,
           1462551-1462568
          Length = 531

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 255 STGPLIDLAVDNDGIATLTMQRPPVNSLNLELLDALGKALDDVSKNKSRGVVLTSS-SPT 431
           ++GPL   ++D + +  +TM+      L  ++LD   + +D  +K K   + L  S SPT
Sbjct: 398 NSGPLPSYSLDQEAVGIITMEDVMEQLLQEDILDETDEYVDVHNKIKINMLPLGKSLSPT 457

Query: 432 V 434
           +
Sbjct: 458 I 458


>04_01_0620 - 8151065-8151791,8152246-8152418
          Length = 299

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 225 TTPAFRSMSASTGPLIDLAVDNDG 296
           T+PA RS+  ST P++ L  D  G
Sbjct: 184 TSPAGRSLDLSTAPILSLGADGAG 207


>01_06_1417 - 37189068-37190321
          Length = 417

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
 Frame = +3

Query: 210 ATVRYTTPAFRSMSASTGPLIDLAVDNDGIATLTMQRPPVNSLNLELLDALGKA------ 371
           +T+  T+   +S+ A +  +  + +D D +  L +     N+LNL+L + +GK       
Sbjct: 191 STMELTSHTLKSLFAKSVGVDKIILDTDNLEVLNL-----NALNLDLFELIGKGTLKHLK 245

Query: 372 LDDVS 386
           +DDVS
Sbjct: 246 IDDVS 250


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,802,916
Number of Sequences: 37544
Number of extensions: 241714
Number of successful extensions: 555
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)