Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e24
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92837-4|CAH10846.1|  193|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    28   3.7  
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    28   3.7  
AF125459-14|AAD12843.1|  297|Caenorhabditis elegans Hypothetical...    28   4.9  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    27   6.5  
AF016655-2|AAK72056.2|  207|Caenorhabditis elegans Hypothetical ...    27   6.5  

>Z92837-4|CAH10846.1|  193|Caenorhabditis elegans Hypothetical
           protein R03E1.4 protein.
          Length = 193

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +3

Query: 138 SNLSTKFNSNWTSVFRMFPLRQVIATVRYTTPAFRSMSAS--TGPLIDLAVDNDGIATLT 311
           SN+   FN    S  +M  L   + TVR T+      S+   T P++ +   N+ + T+ 
Sbjct: 110 SNVPETFNVAGPSNSKMVLLEAYMNTVRQTSSVVGQSSSEMHTTPIVPIIQANNDLLTVK 169

Query: 312 MQRPPVNSL 338
            Q PP  S+
Sbjct: 170 PQAPPNQSI 178


>Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical
           protein T09E11.7 protein.
          Length = 663

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = -3

Query: 309 LMLLYRHYQLPSLLKDLYLLTLIGMLELYSVQLQLLGEEETF*TLKSNLN*TLYL 145
           + L +  Y+LPS L  L      G   LYSV    L  E  F T   +++ TLYL
Sbjct: 253 ISLAFFKYELPSTLMRLIFTIFTGCFILYSVDDDYL--ENRFLTYIGDISYTLYL 305


>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
           protein C44E4.1a protein.
          Length = 2712

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 276 LAVDNDGIATLTMQRPPVNSLNLELLDALG---KALDDVSKNKSRGVVLTSSSPTVFS 440
           LA+D+  I    + R   N + L+ L  LG    A+D++     R  +LT+S+  V+S
Sbjct: 392 LALDHRDITIEVIPRSNQNRVTLKSLRLLGCDRSAMDEIQPRYERQPILTNSNKLVYS 449


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
           protein C44E4.1c protein.
          Length = 2710

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 276 LAVDNDGIATLTMQRPPVNSLNLELLDALG---KALDDVSKNKSRGVVLTSSSPTVFS 440
           LA+D+  I    + R   N + L+ L  LG    A+D++     R  +LT+S+  V+S
Sbjct: 392 LALDHRDITIEVIPRSNQNRVTLKSLRLLGCDRSAMDEIQPRYERQPILTNSNKLVYS 449


>AF125459-14|AAD12843.1|  297|Caenorhabditis elegans Hypothetical
           protein Y25C1A.13 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
 Frame = +3

Query: 219 RYTTPAFRSMSASTGPLI---DLAVDNDG--IATLTMQRPP-VNSLNLELLDALGKALDD 380
           R   P   S + ST P +   +++V  +   +  + + RP  +N+  +++     KA+D 
Sbjct: 5   RRLLPQISSRALSTSPALKSSEISVKEERPYVYNVKLNRPAKLNTFTMDMWREFKKAIDS 64

Query: 381 VSKNKSRGVVLTSSSPTVFSAGLDI 455
           ++ +     ++ S     F AG+DI
Sbjct: 65  LADDPKCRSIIISGEGKAFCAGIDI 89


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 2 protein.
          Length = 1274

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 504 CPECFNSFLYQVCTSP*CPDQQRIL*VM 421
           CP CF++F    C     PDQ + + VM
Sbjct: 109 CPSCFDNFAKLWCQFTCSPDQSKFMKVM 136


>AF016655-2|AAK72056.2|  207|Caenorhabditis elegans Hypothetical
           protein C17F4.8 protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 146 KYKVQFKLDFSVQNVSSSPSNCNCTLYNSSIPINV 250
           KY+ QF + F+ QN  S  +NC      SSI +++
Sbjct: 152 KYRDQFHIAFAPQNNCSLSANCQFKSVKSSIFLSI 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,504,200
Number of Sequences: 27780
Number of extensions: 227797
Number of successful extensions: 508
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)