Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e22
         (278 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    24   4.6  
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    24   4.6  
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c...    23   6.1  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    23   6.1  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    23   6.1  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    23   6.1  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    23   6.1  

>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 239 SAMIHQEISDNX*KTPIVDGVIV 171
           +A+I    SDN   TP+VDG+I+
Sbjct: 150 TALIVDIGSDNASVTPVVDGLII 172


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 2   RESYT*TYKGAIPIGTYLLN 61
           RE++T TY    P+GTYL++
Sbjct: 191 RENWTETYVQWSPMGTYLVS 210


>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 38  PIGTYLLNF-DFCD*-RNLQRKMSCPYNAEQLDQLKSFXEI 154
           P+  +  +F  FC   +N   K S PY A +LD++++  +I
Sbjct: 17  PVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDI 57


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 141 DFNWSNCSALYGQLIFL 91
           DF W NC  + G  IF+
Sbjct: 673 DFLWRNCGIILGFAIFI 689


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 182 GVIVAAVFYIFPQRIST 132
           GV++A VFYIF    ST
Sbjct: 10  GVLLAIVFYIFTYGFST 26


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 174 SCGCVLHISXKDFNWSNCSALYGQLIFL 91
           SC  +  IS    +WS  S L G+++FL
Sbjct: 120 SCVIIGSISGIILSWSPSSFLLGKIVFL 147


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 191 IVDGVIVAAVFYIFPQRISTGLIAQRCTGNSFFFVGF 81
           +V  VI A+V +    +  TGL+A   +GN F  + F
Sbjct: 617 LVWNVISASVQWTLASKF-TGLLASSSSGNDFAVIDF 652


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,020,240
Number of Sequences: 5004
Number of extensions: 16871
Number of successful extensions: 32
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)