Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e21
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    25   2.9  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    25   5.0  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   5.0  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   5.0  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    24   6.7  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    24   8.8  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    24   8.8  

>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 154 LCESVSQTSLCTARGRYPNNDVE-DCRGYTMCLMGGANNFTQYRLTCPIGFV 306
           LC  + +T     RG  P+      CR  T+    G ++F+QY +   I  V
Sbjct: 112 LCSKIRETQ---GRGLMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLV 160


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 212 LFGYLPRAVHS-DVWLTLSHNPIRTTHFNNLFILYIHMHSVLCLTSLTQF 66
           LF  +P A+   D+W+ LS    ++  FN L  ++I       +T  ++F
Sbjct: 48  LFNPMPVALSDFDLWIKLSSKVYQSESFNKLVRMHIFQFDGQYITLNSEF 97


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 122 FILYIHMHSVLCLTSLTQF*ILSFTFRPFFV*YVLDAF 9
           F   +H+H ++ L  LT F I  +      + YV DA+
Sbjct: 407 FCSKVHIHYIVSLIGLTIFNIADYHIWQAMLLYVTDAY 444


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = +1

Query: 199 RYPNNDVEDCRGYTMCLMGGANNFTQYRLTCPIGFVYSHKEQXCTNVTSYSCHES 363
           +Y  +  +DC  ++ CL   A+     RLT P             + T +SC  S
Sbjct: 328 KYAPSKTQDCCAFSQCLSKIADWLRSCRLTKPESSSVPPSSSISRSSTIHSCTSS 382


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 224 SSTSLFGYLPRAVHSDVWLTLSHNPIRTTH 135
           S   +F   PR++ + VW   S  P+ T H
Sbjct: 284 SVKGIFALCPRSIQNLVWTNQSTIPMMTLH 313


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -2

Query: 179 DVWLTLSHNPIRTTHFNNLFILYIHM 102
           D W  LS  P   TH+ N +++ + +
Sbjct: 794 DRWNDLSDVPDEKTHYENTYVMILRL 819


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 196 HGQYIAMFG*HFHIIPLELRISTIYSSFIFTCTLYFV*QVSRSFKSYLLPLD 41
           H QYI ++    + +  ++ IS IYS+F      +F    S S+   L P D
Sbjct: 260 HNQYIYIWNKETYAMIQQIGISNIYSTFSCHKNTFF---TSNSYVWILTPED 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,631,307
Number of Sequences: 5004
Number of extensions: 33726
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)