Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e21
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    27   0.094
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    27   0.094
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   2.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   2.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   3.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   4.7  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              20   8.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   8.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   8.2  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 26.6 bits (56), Expect = 0.094
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 260 APPIRHIVYPRQSSTSLFGYLPRAVHSDVWLTLSHNPIRTTHFNNLF-ILYIHMHSVL 90
           AP  +H+++P +    L+G  P  +     +     P+    FN ++ I+Y+H+  V+
Sbjct: 380 APAPQHLIHPGKDINKLYGMTPSDIDKYSRIVF---PVCFVCFNLMYWIIYLHISDVV 434


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 26.6 bits (56), Expect = 0.094
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -2

Query: 260 APPIRHIVYPRQSSTSLFGYLPRAVHSDVWLTLSHNPIRTTHFNNLF-ILYIHMHSVL 90
           AP  +H+++P +    L+G  P  +     +     P+    FN ++ I+Y+H+  V+
Sbjct: 380 APAPQHLIHPGKDINKLYGMTPSDIDKYSRIVF---PVCFVCFNLMYWIIYLHISDVV 434


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 123 IHPLYSHALC 94
           +HPLY H +C
Sbjct: 274 VHPLYGHGVC 283


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +2

Query: 251 WEERIILPNTD*RAP*ASFTAIKSNXAQMSPVTLAT 358
           WEE  IL N   +   A       N ++ SPV  AT
Sbjct: 232 WEEVYILQNLQKKRTRAEGRLSSDNMSKKSPVRKAT 267


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 260 APPIRHIVYPRQSSTSLFGYLP 195
           AP  +H+++P +    L+G  P
Sbjct: 318 APAPQHLIHPGKDINKLYGMTP 339


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 168 QPNIAMYCPWKIS 206
           QPN   YC W+++
Sbjct: 5   QPNRPSYCTWELN 17


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 165 CQPNIAMYCPW 197
           C PN+A+Y  W
Sbjct: 582 CDPNLAVYGVW 592


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   IRKRRVHITQKKV*R*KIRFKTA*DLLN 88
           I    VHI   K+ +  +++KT  D+LN
Sbjct: 107 ISDANVHIKISKIFQCFMKYKTITDILN 134


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 295 IGFVYSHKEQXCTNVTSY 348
           I   + HK Q  T VT Y
Sbjct: 924 INVKWQHKSQDTTEVTKY 941


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +1

Query: 295 IGFVYSHKEQXCTNVTSY 348
           I   + HK Q  T VT Y
Sbjct: 920 INVKWQHKSQDTTEVTKY 937


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,957
Number of Sequences: 438
Number of extensions: 2189
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)