Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17e19
(309 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR456607-1|CAG30493.1| 307|Homo sapiens UFD1L protein. 95 4e-20
BC005087-1|AAH05087.1| 307|Homo sapiens ubiquitin fusion degrad... 95 4e-20
BC001049-1|AAH01049.1| 307|Homo sapiens ubiquitin fusion degrad... 95 4e-20
AY101594-1|AAM48288.1| 307|Homo sapiens ubiquitin fusion degrad... 95 4e-20
AJ239058-1|CAC20414.1| 307|Homo sapiens ubiquitin fusion degrad... 95 4e-20
AF141201-1|AAD28788.1| 307|Homo sapiens ubiquitin fusion-degrad... 95 4e-20
U64444-1|AAD08720.1| 343|Homo sapiens ubiquitin fusion-degradat... 92 3e-19
M69296-1|AAA58461.1| 336|Homo sapiens estrogen receptor-related... 27 8.5
>CR456607-1|CAG30493.1| 307|Homo sapiens UFD1L protein.
Length = 307
Score = 95.1 bits (226), Expect = 4e-20
Identities = 49/71 (69%), Positives = 56/71 (78%), Gaps = 6/71 (8%)
Frame = +3
Query: 111 FGFNMF-HEISRPF----NMTYRCYSVSMLPG-NERQDVERGGKIIMPPSALEQLTRLNI 272
F FNMF H I R F + YRC+SVSML G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 273 EYPMIFKLTNK 305
YPM+FKLTNK
Sbjct: 62 TYPMLFKLTNK 72
>BC005087-1|AAH05087.1| 307|Homo sapiens ubiquitin fusion
degradation 1 like (yeast) protein.
Length = 307
Score = 95.1 bits (226), Expect = 4e-20
Identities = 49/71 (69%), Positives = 56/71 (78%), Gaps = 6/71 (8%)
Frame = +3
Query: 111 FGFNMF-HEISRPF----NMTYRCYSVSMLPG-NERQDVERGGKIIMPPSALEQLTRLNI 272
F FNMF H I R F + YRC+SVSML G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 273 EYPMIFKLTNK 305
YPM+FKLTNK
Sbjct: 62 TYPMLFKLTNK 72
>BC001049-1|AAH01049.1| 307|Homo sapiens ubiquitin fusion
degradation 1 like (yeast) protein.
Length = 307
Score = 95.1 bits (226), Expect = 4e-20
Identities = 49/71 (69%), Positives = 56/71 (78%), Gaps = 6/71 (8%)
Frame = +3
Query: 111 FGFNMF-HEISRPF----NMTYRCYSVSMLPG-NERQDVERGGKIIMPPSALEQLTRLNI 272
F FNMF H I R F + YRC+SVSML G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 273 EYPMIFKLTNK 305
YPM+FKLTNK
Sbjct: 62 TYPMLFKLTNK 72
>AY101594-1|AAM48288.1| 307|Homo sapiens ubiquitin fusion
degradation 1-like protein.
Length = 307
Score = 95.1 bits (226), Expect = 4e-20
Identities = 49/71 (69%), Positives = 56/71 (78%), Gaps = 6/71 (8%)
Frame = +3
Query: 111 FGFNMF-HEISRPF----NMTYRCYSVSMLPG-NERQDVERGGKIIMPPSALEQLTRLNI 272
F FNMF H I R F + YRC+SVSML G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 273 EYPMIFKLTNK 305
YPM+FKLTNK
Sbjct: 62 TYPMLFKLTNK 72
>AJ239058-1|CAC20414.1| 307|Homo sapiens ubiquitin fusion
degradation 1 protein protein.
Length = 307
Score = 95.1 bits (226), Expect = 4e-20
Identities = 49/71 (69%), Positives = 56/71 (78%), Gaps = 6/71 (8%)
Frame = +3
Query: 111 FGFNMF-HEISRPF----NMTYRCYSVSMLPG-NERQDVERGGKIIMPPSALEQLTRLNI 272
F FNMF H I R F + YRC+SVSML G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 273 EYPMIFKLTNK 305
YPM+FKLTNK
Sbjct: 62 TYPMLFKLTNK 72
>AF141201-1|AAD28788.1| 307|Homo sapiens ubiquitin
fusion-degradation 1 protein protein.
Length = 307
Score = 95.1 bits (226), Expect = 4e-20
Identities = 49/71 (69%), Positives = 56/71 (78%), Gaps = 6/71 (8%)
Frame = +3
Query: 111 FGFNMF-HEISRPF----NMTYRCYSVSMLPG-NERQDVERGGKIIMPPSALEQLTRLNI 272
F FNMF H I R F + YRC+SVSML G N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 273 EYPMIFKLTNK 305
YPM+FKLTNK
Sbjct: 62 TYPMLFKLTNK 72
>U64444-1|AAD08720.1| 343|Homo sapiens ubiquitin fusion-degradation
1 like protein protein.
Length = 343
Score = 91.9 bits (218), Expect = 3e-19
Identities = 48/71 (67%), Positives = 55/71 (77%), Gaps = 6/71 (8%)
Frame = +3
Query: 111 FGFNMF-HEISRPF----NMTYRCYSVSMLPG-NERQDVERGGKIIMPPSALEQLTRLNI 272
F FNMF H I R F + YRC+SVSML N+R DVE+GGKIIMPPSAL+QL+RLNI
Sbjct: 2 FSFNMFDHPIPRVFQNRFSTQYRCFSVSMLAWPNDRSDVEKGGKIIMPPSALDQLSRLNI 61
Query: 273 EYPMIFKLTNK 305
YPM+FKLTNK
Sbjct: 62 TYPMLFKLTNK 72
>M69296-1|AAA58461.1| 336|Homo sapiens estrogen receptor-related
protein protein.
Length = 336
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 162 RCYSVSMLPGNERQDVERGGKIIMPPSALEQL 257
+CY V M+ G+E ++ R K P+ L+ L
Sbjct: 244 KCYEVGMMKGDEEKENNRASKPHSTPATLQWL 275
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,793,838
Number of Sequences: 237096
Number of extensions: 576458
Number of successful extensions: 950
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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