Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e19
         (309 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060735-1|AAL28283.1|  316|Drosophila melanogaster GH18603p pro...   108   2e-24
AF228283-1|AAK00731.1|  316|Drosophila melanogaster ubiquitin fu...   108   2e-24
AF228282-1|AAK00730.1|  316|Drosophila melanogaster ubiquitin fu...   108   2e-24
AE014296-1911|AAF50090.1|  316|Drosophila melanogaster CG6233-PA...   108   2e-24
AE013599-1897|AAF58243.1|  141|Drosophila melanogaster CG17389-P...    26   8.2  

>AY060735-1|AAL28283.1|  316|Drosophila melanogaster GH18603p
           protein.
          Length = 316

 Score =  108 bits (259), Expect = 2e-24
 Identities = 50/70 (71%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
 Frame = +3

Query: 102 MFQF-GFNMFHEISRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEY 278
           MF F GFNM     R F+  Y+C+SVSMLPGNER DVE+GGKIIMPPSAL+ LTRLN+EY
Sbjct: 1   MFHFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEY 60

Query: 279 PMIFKLTNKK 308
           PM+FKLTN K
Sbjct: 61  PMLFKLTNVK 70


>AF228283-1|AAK00731.1|  316|Drosophila melanogaster ubiquitin
           fusion-degradation 1-like protein protein.
          Length = 316

 Score =  108 bits (259), Expect = 2e-24
 Identities = 50/70 (71%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
 Frame = +3

Query: 102 MFQF-GFNMFHEISRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEY 278
           MF F GFNM     R F+  Y+C+SVSMLPGNER DVE+GGKIIMPPSAL+ LTRLN+EY
Sbjct: 1   MFHFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEY 60

Query: 279 PMIFKLTNKK 308
           PM+FKLTN K
Sbjct: 61  PMLFKLTNVK 70


>AF228282-1|AAK00730.1|  316|Drosophila melanogaster ubiquitin
           fusion-degradation 1-like protein protein.
          Length = 316

 Score =  108 bits (259), Expect = 2e-24
 Identities = 50/70 (71%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
 Frame = +3

Query: 102 MFQF-GFNMFHEISRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEY 278
           MF F GFNM     R F+  Y+C+SVSMLPGNER DVE+GGKIIMPPSAL+ LTRLN+EY
Sbjct: 1   MFHFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEY 60

Query: 279 PMIFKLTNKK 308
           PM+FKLTN K
Sbjct: 61  PMLFKLTNVK 70


>AE014296-1911|AAF50090.1|  316|Drosophila melanogaster CG6233-PA
           protein.
          Length = 316

 Score =  108 bits (259), Expect = 2e-24
 Identities = 50/70 (71%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
 Frame = +3

Query: 102 MFQF-GFNMFHEISRPFNMTYRCYSVSMLPGNERQDVERGGKIIMPPSALEQLTRLNIEY 278
           MF F GFNM     R F+  Y+C+SVSMLPGNER DVE+GGKIIMPPSAL+ LTRLN+EY
Sbjct: 1   MFHFSGFNMMFPEGRNFHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEY 60

Query: 279 PMIFKLTNKK 308
           PM+FKLTN K
Sbjct: 61  PMLFKLTNVK 70


>AE013599-1897|AAF58243.1|  141|Drosophila melanogaster CG17389-PA
           protein.
          Length = 141

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 250 SNADGGIIILPPLSTSCLSFPG 185
           S+ D  I++LPP S  C  FPG
Sbjct: 63  SSWDQSILLLPPSSPLCHHFPG 84


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,781,461
Number of Sequences: 53049
Number of extensions: 196110
Number of successful extensions: 474
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 589756776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)