Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e19
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69635-3|CAA93460.1|  342|Caenorhabditis elegans Hypothetical pr...    45   1e-05
Z69635-4|CAB54216.1|  336|Caenorhabditis elegans Hypothetical pr...    42   7e-05

>Z69635-3|CAA93460.1|  342|Caenorhabditis elegans Hypothetical
           protein F19B6.2a protein.
          Length = 342

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
 Frame = +3

Query: 147 FNMTYRCYSVSMLPG---NERQDVERGGKIIMPPSALEQLTRLNIEYPMIFKLTN 302
           ++ T+  Y    LP    ++  ++  GGKI++P SAL  L + NI  PM+FKLTN
Sbjct: 21  YDQTFVVYGPVFLPNATQSKISEINYGGKILLPSSALNLLMQYNIPMPMLFKLTN 75


>Z69635-4|CAB54216.1|  336|Caenorhabditis elegans Hypothetical
           protein F19B6.2b protein.
          Length = 336

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = +3

Query: 204 DVERGGKIIMPPSALEQLTRLNIEYPMIFKLTN 302
           ++  GGKI++P SAL  L + NI  PM+FKLTN
Sbjct: 37  EINYGGKILLPSSALNLLMQYNIPMPMLFKLTN 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,234,394
Number of Sequences: 27780
Number of extensions: 107775
Number of successful extensions: 224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)