Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e19
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   1.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   2.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   2.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   2.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   3.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   3.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   4.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 226 ILPPLSTSCLSFPGNIE 176
           + P  S+SC   PGN+E
Sbjct: 71  LYPAFSSSCDPVPGNLE 87


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 286 IIGYSILSLVSCSNADGGIIILPPLSTSCLSFPGNI 179
           I+G+ I  L   S    G+++   LST  L  P N+
Sbjct: 54  ILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNL 89


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 112 SDSICFTKYLGHLI*LIDAIQS 177
           S + C+  +LGH   LI ++ S
Sbjct: 362 SGATCYALFLGHATNLIQSLDS 383


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 112 SDSICFTKYLGHLI*LIDAIQS 177
           S + C+  +LGH   LI ++ S
Sbjct: 330 SGATCYALFLGHATNLIQSLDS 351


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 204 DVERGGKIIMPPS 242
           D+ +GGK+  PP+
Sbjct: 268 DIAKGGKLACPPA 280


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 286 IIGYSILSLVSCSNADGGIIILPPLSTSCLSFPGNI 179
           I+G+ I  L   S    G+++   LST  L  P N+
Sbjct: 20  ILGFVIGMLGFVSVMGNGMVVYIFLSTKSLRTPSNL 55


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 219 GKIIMPPSALEQLT 260
           G  +MPP+ L QLT
Sbjct: 87  GLAVMPPAVLLQLT 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,270
Number of Sequences: 438
Number of extensions: 1634
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)