Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e18
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    29   0.32 
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    26   3.0  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    26   3.0  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   3.9  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   6.8  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   6.8  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    24   9.0  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    24   9.0  

>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 29.1 bits (62), Expect = 0.32
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = -2

Query: 380  THRQSFTEISSGEKXCTSRLTWNLSLSAFMLEPRSRDAAASCLHGLK*SSESTGQATAAS 201
            TH  + T+ +       S  T N  L+   LEP S +A  S     K + ES G++ A  
Sbjct: 1037 THNPTVTQPTDDTGGLNSYNTENPLLTNNTLEPSSVEAIVSSKDSDKHAKESKGKSLAPL 1096

Query: 200  MSFGVSAN 177
            +S  VS N
Sbjct: 1097 ISSRVSTN 1104


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 214 ACPVLSEDYFRPWRQLAAAS 273
           +CP+ +EDY++ + Q+ AAS
Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 80  YNQICLFYHSCWVTGPAFVTTTGPVVLLIKILD 178
           Y  I   YHS WVT  A+   + P V+L  +L+
Sbjct: 491 YFLIMFVYHSSWVTSNAY---SSPTVVLSTVLN 520


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 220 PVLSEDYFRPWRQLAAASRDLGSSIKADKDKFQVNL 327
           P  SED   P + L  A  ++   +K+D ++F+V++
Sbjct: 439 PTSSEDNLHPLQPLTTADEEMDLDLKSD-ERFKVDI 473


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 190 PNDMLAAVACPVLSEDYFRP 249
           PND LA ++C  L  DY  P
Sbjct: 56  PNDELAPLSCEGLGPDYENP 75


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 223 VLSEDYFRPWRQLAAASRDLGSSIKADKDKFQV 321
           +L+  Y + W+QL++  + +  S  +DKD  Q+
Sbjct: 358 LLNGRYKKRWQQLSSEVKKISDSASSDKDVKQL 390


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 73  IQIQPNMSLLPFVLGDWPRVRHNHW 147
           IQI+PN  L  +   ++ R+ +N W
Sbjct: 478 IQIEPNSDLTGYDYYEYKRLLYNEW 502


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +1

Query: 229  SEDYFRPWRQLAAASRDLGSSIKADKDKFQVNLDVXHFSPEEISVKDCRWVHR 387
            +E   +  R L +A +D+   +    D  Q NLDV   S ++++ +  +W H+
Sbjct: 1431 NESMLQSKRILDSAQQDVAKFV----DTSQSNLDVQLISLKDVNDRKYKWKHK 1479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,832
Number of Sequences: 5004
Number of extensions: 37373
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)