Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e18
         (441 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0725 + 20991640-20992471,20993308-20993418,20993542-209937...    28   2.9  
05_03_0628 - 16367841-16369259                                         28   2.9  
05_03_0122 - 8669422-8669609,8669759-8670111,8670669-8670824,867...    28   3.8  
09_03_0007 - 11430123-11430513,11430605-11430794,11431114-114311...    27   6.7  
02_01_0539 + 3941189-3941896,3942110-3942394,3942508-3943394,394...    27   6.7  

>07_03_0725 +
           20991640-20992471,20993308-20993418,20993542-20993739,
           20993860-20993891,20993943-20994153,20994806-20995043,
           20995507-20995657,20996171-20996533
          Length = 711

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = +1

Query: 163 DQDFGLALTPNDMLAAVACPVLSEDYFRPWRQLAAASRD 279
           D+ FGLAL   DM  A AC       F+  R L    RD
Sbjct: 75  DRVFGLALCRGDMRDAAACAGCVSGAFQRLRALCGRDRD 113


>05_03_0628 - 16367841-16369259
          Length = 472

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -2

Query: 368 SFTEISSGEKXCTSRLTWNLSLSAFMLEPRSRDAAASCLHGLK*SSESTGQATAASMSFG 189
           SF  +SSG+   T       S S+F     S++++++ L GLK     T  ++  S S G
Sbjct: 254 SFKNLSSGQNAFTGLAGTGFSGSSFSFGSGSKESSSAPLFGLK-----TDGSSFPSFSIG 308

Query: 188 VSANPKS 168
            S N  S
Sbjct: 309 ASNNGSS 315


>05_03_0122 -
           8669422-8669609,8669759-8670111,8670669-8670824,
           8670999-8671168,8672133-8672297,8673190-8673384,
           8673506-8673634,8673759-8673980
          Length = 525

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
 Frame = +1

Query: 130 VRHNHWPSRLVDQDFGLALTPNDMLAAVACPV---LSEDYFRPWRQLAAASRDLGSSIK- 297
           +  NHW + +V+ DF         L AV  PV   ++ D   P   +  + + L ++ K 
Sbjct: 235 ILRNHWSTYIVEDDFKFISASG--LTAVRIPVGWWIASDPNPPAPYVGGSLQTLDNAFKW 292

Query: 298 ADKDKFQVNLDVXHFSPEEISVKDCRWVHRGGRAXHQE 411
           A+K K  V +D+ H +P   +     W H   R   QE
Sbjct: 293 AEKYKLGVIIDL-HAAPGSQN----PWEHSSSRDGTQE 325


>09_03_0007 -
           11430123-11430513,11430605-11430794,11431114-11431182,
           11431601-11431727,11431843-11432083,11432519-11432596,
           11433004-11433109,11433560-11433625,11437021-11437043,
           11438106-11438177,11438256-11438394,11439505-11439919
          Length = 638

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 175 QNLDQQDDWASGCDERGASHPTRMVEETYL 86
           QNLD++ DW    +E+G+   T++V +  L
Sbjct: 241 QNLDEKLDWLGELEEKGSRTITKVVFDAML 270


>02_01_0539 +
           3941189-3941896,3942110-3942394,3942508-3943394,
           3943473-3943643,3943726-3943744,3943763-3944014,
           3944100-3944138,3944244-3944282
          Length = 799

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +1

Query: 94  SLLPFVLGDWPRVRHNHWP-SRLVDQDFGLALTPN 195
           S  PFV GD P  R  +W  +R    D G    PN
Sbjct: 192 SCTPFVFGDIPHPRARNWARARYQKHDDGTIFMPN 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,764,228
Number of Sequences: 37544
Number of extensions: 269200
Number of successful extensions: 824
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)