Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17e17
(444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ... 30 0.14
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 27 1.3
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 27 1.7
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch... 26 3.0
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 3.0
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 25 5.2
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa... 25 5.2
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 5.2
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 6.9
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 24 9.1
>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
Length = 347
Score = 30.3 bits (65), Expect = 0.14
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +1
Query: 166 AIYYASATAKEKYEINILMRAACKEAA-IYGEALLPIERNPTVITVILN--PVANKRKAK 336
AIYY ++ + N+++ C + + + + P+E P + V L+ P A+
Sbjct: 27 AIYY------DRRQKNLIIEKYCSQVRHLADQPMAPLEL-PRKLKVYLHGPPGDGIYVAR 79
Query: 337 QEFEKYCXPXXXXXXXQVDVVQTASEGNAKEIV 435
+EFE+Y P + + V++ EGN E V
Sbjct: 80 EEFEEYIRPIFNAAAIEFETVESKGEGNLLEQV 112
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 27.1 bits (57), Expect = 1.3
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 298 VILNPVANKRKAKQEFEKYCXPXXXXXXXQVDVVQTASEGNAKEIVXTL 444
V +NP K KAK +E P +VV T + +AK I L
Sbjct: 110 VFINPHGGKGKAKHIWESEAEPVFSSAHSICEVVLTRRKDHAKSIAKNL 158
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.6 bits (56), Expect = 1.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 167 LYTTLVRLQKKNMKLIYLCE 226
LYTTL++L KK + LCE
Sbjct: 361 LYTTLIKLSKKERIMDVLCE 380
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 146 NQSLVQSLYTTLVRLQKKNMKLIYL 220
NQS + LY L+ L +K + IY+
Sbjct: 320 NQSALMQLYAALISLGRKIVSYIYV 344
>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 3.0
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 133 NNWKKSVLGAVAIYYASATAKEKYEINILMRAACKEAAIYGEALLPIERNPTVITVILN 309
N +K L VA Y K+ E +IL ++ + E LP+ R PT ++ ++
Sbjct: 500 NTLEKEPLSDVATEYWKIKTKDIRESHILNNRRILKSLQFIETELPMIRKPTAMSAFID 558
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 3.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 363 WXTIFLKFLFCFPLVGYR 310
W TIFL F+ C L G R
Sbjct: 199 WITIFLVFVICINLFGVR 216
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -3
Query: 133 FVLFWQTSLFFPFFCIKSNKSNYKHKHLRL*NLQISCI 20
F W + F P K ++ KH H R+ N ++C+
Sbjct: 395 FPPLWILASFLPIPRTKIHQMRVKHVHWRIINRVVACL 432
>SPBP19A11.01 |||glycine decarboxylase complex subunit
H|Schizosaccharomyces pombe|chr 2|||Manual
Length = 169
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 243 CNLRRSSPAHRKKPHSHNSYSQPCSQQEES 332
C ++ SSP K + SY+Q C +++ S
Sbjct: 139 CKIKLSSPDELKSLLNDESYAQFCKEEDAS 168
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 425 FAFPSEAVCTTSTCKPPNNSNG 360
FA PSE T + PN+SNG
Sbjct: 51 FAVPSENYADTPSRNTPNSSNG 72
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 24.6 bits (51), Expect = 6.9
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +3
Query: 246 NLRRSSPAHRKKPHSHNSYSQPCSQQEESK 335
+LRRSS + KKP ++NS S+ S+++ SK
Sbjct: 137 HLRRSSRS--KKPVNYNSSSESESEEQISK 164
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 24.2 bits (50), Expect = 9.1
Identities = 17/74 (22%), Positives = 32/74 (43%)
Frame = +1
Query: 91 KKMERIAKFAKTIRNNWKKSVLGAVAIYYASATAKEKYEINILMRAACKEAAIYGEALLP 270
++M ++ + K+ +N+WK+ + A + KYE I A ++ A L
Sbjct: 130 EEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQKKANVTHKELG 189
Query: 271 IERNPTVITVILNP 312
+ +I V NP
Sbjct: 190 VTMQLPIIGVKKNP 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,920
Number of Sequences: 5004
Number of extensions: 32694
Number of successful extensions: 110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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