Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17e17
(444 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0633 + 19446075-19446488,19446607-19446975,19447961-194480... 36 0.015
02_03_0181 + 16100495-16101025,16101335-16101358 27 5.1
06_01_0740 - 5473895-5474061,5474153-5474399,5475207-5475336,547... 27 6.8
04_04_0994 + 29980076-29980441,29980900-29980998,29981075-299816... 27 6.8
04_03_0535 - 16850704-16853001,16854055-16854115,16854228-168543... 27 6.8
03_02_0069 + 5401789-5401965,5403514-5403568,5403674-5405649,540... 27 6.8
01_06_1561 - 38255397-38255595,38255712-38255867,38256040-38257163 27 6.8
05_07_0267 + 28818396-28818513,28819292-28819697,28819796-288199... 27 9.0
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 27 9.0
>10_08_0633 +
19446075-19446488,19446607-19446975,19447961-19448054,
19448137-19448174,19448770-19448916,19449580-19449679,
19449786-19450744,19451143-19451295
Length = 757
Score = 35.9 bits (79), Expect = 0.015
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +1
Query: 277 RNPTVITVILNPVANKRKAKQEFEKYCXPXXXXXXXQVDVVQTASEGNAKEIVXTL 444
R+P I VILNP + ++ + F P +++VV+T G+AK +V T+
Sbjct: 230 RSPPKILVILNPRSGHGRSSKVFHGKVEPIFKLAGFKMEVVKTTHAGHAKSLVSTI 285
>02_03_0181 + 16100495-16101025,16101335-16101358
Length = 184
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = -2
Query: 419 FPSEAVCTTSTCKPPNNSNGXQYFSNSCFAFLLLAT-GLRITVMTVGFLSMGRRASP 252
FPS +V +TSTC P + G + LA G + V+ G RA P
Sbjct: 69 FPSASVTSTSTCNPTDGWRGAPQSGDRGVGRRELAVMGTEVAVVDTRSEGRGSRAPP 125
>06_01_0740 -
5473895-5474061,5474153-5474399,5475207-5475336,
5475874-5475951,5476192-5476337,5476661-5476906,
5477498-5477746,5478356-5478493,5479015-5479113,
5479456-5479641,5480477-5480896
Length = 701
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 303 NNCYDCGVSFDGQESFAVNCSLFTCCSHKYINF 205
NNC DCG++ + ++ N L C K NF
Sbjct: 385 NNCTDCGITGINRTNWLNNSDLTGCFDTKSGNF 417
>04_04_0994 +
29980076-29980441,29980900-29980998,29981075-29981612,
29982211-29982494,29983014-29983034,29983238-29983452,
29983538-29983691,29984089-29984220
Length = 602
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -1
Query: 297 CYDCGVSFDGQESFAVNCSLF 235
CY C + +G E F +C LF
Sbjct: 494 CYQCNSAIEGYEHFRGSCKLF 514
>04_03_0535 - 16850704-16853001,16854055-16854115,16854228-16854323,
16854394-16854521,16855016-16855067,16855182-16855274,
16855473-16855590,16856456-16856609,16857512-16857643,
16859136-16859216,16859353-16859507,16860118-16860343,
16860423-16860507,16860593-16860689,16861785-16861949,
16862046-16862121,16863041-16863103,16863193-16863359,
16863495-16863669,16863743-16863835,16864694-16864810,
16865589-16865778,16866092-16866126
Length = 1618
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 97 MERIAKFAKTIRNNWKKSVLGAVAIYYASATA 192
ME I +FA+ ++NN K + + + I ASA A
Sbjct: 1395 MEAIVQFARMLKNNVKPNEITFLGILMASARA 1426
>03_02_0069 + 5401789-5401965,5403514-5403568,5403674-5405649,
5405710-5405868,5406081-5406252,5406617-5406915,
5407147-5407392
Length = 1027
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 34 VSSITLNVYVYSLIYS-I*CKKMERIAKFAKTIRNNWKKSVLGAVAIY 174
++++ N +V+ +++ + ++MERI F + NN +VLG+ I+
Sbjct: 934 LNTLIFNCFVFCQVFNEVSSREMERINVFEGILDNNVFVAVLGSTVIF 981
>01_06_1561 - 38255397-38255595,38255712-38255867,38256040-38257163
Length = 492
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Frame = -1
Query: 324 LVGYRVENNCYDCGVSFD----GQESFAVNCSLFTCCSHK--YINFIF 199
++G R+E DCG+SF+ G V ++ CC + +NF F
Sbjct: 280 VIGQRLEKLAEDCGISFEFRAVGANIGDVTPAMLDCCPGEALVVNFAF 327
>05_07_0267 +
28818396-28818513,28819292-28819697,28819796-28819973,
28820414-28820553,28820629-28821874,28821952-28822052,
28822170-28822314,28822755-28822823,28822910-28822955,
28823049-28823422,28823622-28823701,28823813-28823948,
28824199-28824358,28824582-28824664,28825417-28825545
Length = 1136
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +2
Query: 143 RNQSLVQSLYTTLVRLQKKNMKLIYLCEQHVKRLQF 250
RN +L+ L L+ L KN++L +LC+ + + +F
Sbjct: 165 RNVNLIALLTRDLIDLICKNLELYHLCQAKIGKEKF 200
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +2
Query: 158 VQSLYTTLVRLQKKNMKLIYLCEQHVKRLQ 247
V+S L+ LQK+N KLI L EQ +RLQ
Sbjct: 1940 VESGAAELLFLQKENHKLIELNEQLEQRLQ 1969
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,172,841
Number of Sequences: 37544
Number of extensions: 184881
Number of successful extensions: 496
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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