Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e17
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-8|AAC48294.1|  315|Caenorhabditis elegans Hypothetical pr...    29   1.1  
Z81477-6|CAB03930.1|  176|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear recep...    29   2.0  
AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF038615-1|AAB94149.3|  532|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical ...    27   4.6  
Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine rec...    27   8.1  
AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal t...    27   8.1  
AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal t...    27   8.1  

>U00033-8|AAC48294.1|  315|Caenorhabditis elegans Hypothetical
           protein F37C12.2 protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 148 ISSNCFVLFWQTSLFFPFFCIKSNKSNYKHKH 53
           ISSN FV     +L FPFF I S  +N+  K+
Sbjct: 242 ISSNMFVNSVIFALLFPFFIITSYPANWNRKY 273


>Z81477-6|CAB03930.1|  176|Caenorhabditis elegans Hypothetical
           protein C27C7.8 protein.
          Length = 176

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 31  SVSSITLNVYVYSL--IYSI*CKKMERIAKFAKTIRNNWKKSVLGAVAIYYASATAKEKY 204
           S++++ LN+Y YS   ++ I   K  + +   K +     + V  A+  YY + T  + +
Sbjct: 83  SLANLKLNMYEYSAFKLFCIWNLKFHKTSTALKIVAQEHYEGVCSALRNYYETQTKMDDF 142

Query: 205 EINI 216
           EI I
Sbjct: 143 EIAI 146


>AY204199-1|AAO39200.1|  360|Caenorhabditis elegans nuclear receptor
           NHR-113 protein.
          Length = 360

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 31  SVSSITLNVYVYSL--IYSI*CKKMERIAKFAKTIRNNWKKSVLGAVAIYYASATAKEKY 204
           S++++ LN+Y YS   ++ I   K  + +   K +     + V  A+  YY + T  + +
Sbjct: 267 SLANLKLNMYEYSAFKLFCIWNLKFHKTSTALKIVAQEHYEGVCSALRNYYETQTKMDDF 326

Query: 205 EINI 216
           EI I
Sbjct: 327 EIAI 330


>AL022288-6|CAA18368.1|  341|Caenorhabditis elegans Hypothetical
           protein ZK1025.9 protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +1

Query: 31  SVSSITLNVYVYSL--IYSI*CKKMERIAKFAKTIRNNWKKSVLGAVAIYYASATAKEKY 204
           S++++ LN+Y YS   ++ I   K  + +   K +     + V  A+  YY + T  + +
Sbjct: 248 SLANLKLNMYEYSAFKLFCIWNLKFHKTSTALKIVAQEHYEGVCSALRNYYETQTKMDDF 307

Query: 205 EINI 216
           EI I
Sbjct: 308 EIAI 311


>AF038615-1|AAB94149.3|  532|Caenorhabditis elegans Hypothetical
           protein R02D3.3 protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +2

Query: 146 NQSLVQSLYTTLVRLQKKNMKLI 214
           N  ++Q++Y+T   +QKKN++L+
Sbjct: 201 NPEIIQAIYSTYPAVQKKNLELV 223


>Z66564-8|CAM84731.1|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 210 NFIFFFCSRTSVVYSDCT 157
           +F FFFCS T++ Y D T
Sbjct: 524 SFYFFFCSLTTIGYGDVT 541


>AL032659-3|CAA21749.2|  892|Caenorhabditis elegans Hypothetical
           protein Y71H9A.1 protein.
          Length = 892

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 210 NFIFFFCSRTSVVYSDCT 157
           +F FFFCS T++ Y D T
Sbjct: 524 SFYFFFCSLTTIGYGDVT 541


>Z82078-7|CAB04947.3|  801|Caenorhabditis elegans Hypothetical
           protein W09D6.6 protein.
          Length = 801

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -1

Query: 246 CSLFT--CCSHKYINFIFFFCSRTSVVYSDCTKD*FLPIVSYC-FGKLR 109
           C++F   C S  Y  F F+F   T ++ + C    F  I+S C F K R
Sbjct: 77  CTIFAVICQSIFYFCFTFYFHPYTHLLLAFCVSKLFFWILSLCSFSKWR 125


>U29097-10|AAA68414.1|  348|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 29 protein.
          Length = 348

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/23 (47%), Positives = 17/23 (73%), Gaps = 3/23 (13%)
 Frame = -3

Query: 145 SSNCFV---LFWQTSLFFPFFCI 86
           SS+CF    L++QT+LF  F+C+
Sbjct: 100 SSDCFYDNFLYYQTALFSSFYCV 122


>AF497514-1|AAM33381.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -1

Query: 246 CSLFT--CCSHKYINFIFFFCSRTSVVYSDCTKD*FLPIVSYC-FGKLR 109
           C++F   C S  Y  F F+F   T ++ + C    F  I+S C F K R
Sbjct: 77  CTIFAVICQSIFYFCFTFYFHPYTHLLLAFCVSKLFFWILSLCSFSKWR 125


>AF497513-1|AAM33380.1|  801|Caenorhabditis elegans heavy metal
           tolerance factor 1 protein.
          Length = 801

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = -1

Query: 246 CSLFT--CCSHKYINFIFFFCSRTSVVYSDCTKD*FLPIVSYC-FGKLR 109
           C++F   C S  Y  F F+F   T ++ + C    F  I+S C F K R
Sbjct: 77  CTIFAVICQSIFYFCFTFYFHPYTHLLLAFCVSKLFFWILSLCSFSKWR 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,474,995
Number of Sequences: 27780
Number of extensions: 188765
Number of successful extensions: 654
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)