Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e17
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   4.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   6.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   8.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 198 FFCSRTSVVYSDCTKD*FLPIVSYCFG 118
           FF S  SVV  D T++  L    Y FG
Sbjct: 8   FFLSLVSVVLLDTTQEEKLEWTKYPFG 34


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 336 FCFPLVGYRVENNCYDCGVSFDGQESFAVNCSL 238
           F +P V Y V+N    C V+     S   NC L
Sbjct: 140 FDYPQVPYTVKNFHPRCAVNNYNDPSNVRNCEL 172


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = -1

Query: 237 FTCCSHKYINFIFFFCSRTSVVY 169
           + CC   YI+  F    R   +Y
Sbjct: 211 YNCCPEPYIDITFVVIIRRRTLY 233


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/42 (23%), Positives = 16/42 (38%)
 Frame = -1

Query: 288 CGVSFDGQESFAVNCSLFTCCSHKYINFIFFFCSRTSVVYSD 163
           CG +   +   A+       C  K I     FC    +V++D
Sbjct: 139 CGTTLQNRLDEAILIKNERICILKSITCALQFCHNAGIVHAD 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,538
Number of Sequences: 438
Number of extensions: 2220
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)