Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17e14
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 33 0.028
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 1.8
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 2.4
SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyce... 26 4.2
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb... 26 4.2
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 5.6
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 25 7.4
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 25 7.4
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 25 7.4
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 25 7.4
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 7.4
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 25 9.8
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 33.1 bits (72), Expect = 0.028
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = +2
Query: 110 VHVLDLSRI-VAGPFCTMTLGDLGANVIKVESLSGDEARKWGPPFMKDCGDSYYFQSVNR 286
++ LD S + + P M D+ + +S AR + F G SY F ++NR
Sbjct: 367 LYCLDKSFLFIPKPTLLMNTSDITRVTLSRVGMSVSAARTFDLTFTLRSGTSYQFSNINR 426
Query: 287 NKKSICIDFKSQEGKKIIYDLAKKCDVLVENFIPGKLDQMD 409
++S + F + KI DLA D + + LD D
Sbjct: 427 VEQSALVAFLESKQIKIHNDLA---DETQQTLLTSALDDED 464
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.1 bits (57), Expect = 1.8
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -1
Query: 492 VYGPLGPKPVIAQYISLGLTVLSFSYPTSIW-SSFPGMKFSTSTSHFFARSYI 337
V LG V QYISL + YP+ I+ +S PG+ S+ AR Y+
Sbjct: 1738 VSAELGYSHVCLQYISLMQCLKQACYPSEIYRASLPGLNASSEKE---ARDYL 1787
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.6 bits (56), Expect = 2.4
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 197 ESLSGDEARKWGPPFMKDCGDSYYFQSVNRNKKSICIDFKSQEGKKIIYDLAKKCDVLVE 376
+S+ + RK G + D G + + QS NR K + D K + ++I + C+V +E
Sbjct: 6 KSIRRESLRKLG--CLPDHGWNLFVQSSNRYSKLLEADSKLFKAQRIEDTVLSICEVTLE 63
Query: 377 N 379
N
Sbjct: 64 N 64
>SPCC4G3.15c |||CCR4-Not complex subunit Not2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 176
Score = 25.8 bits (54), Expect = 4.2
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -1
Query: 498 FFVYGPLGPKPVIAQYISLGLTVLSFSYPTS--IW-SSFPGMKFSTSTSHFFARSYIIFF 328
F+++ + P+ V+ + + LT ++ + +W + PGMK T F R Y +FF
Sbjct: 90 FYIFYTM-PRDVMQEAAAQELTNRNWRFHKELRVWLTPVPGMKPLQRTPQF-ERGYYMFF 147
Query: 327 PSCDLKSIQMLFLFLF 280
K I+ FL ++
Sbjct: 148 DPIHWKRIKKDFLLMY 163
>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 528 IAAAITSYPGFFVYGPLGPKPVIAQYIS 445
+ A I S+ FV+G G KP I QY S
Sbjct: 326 VLAEIPSWLKGFVHGVSGTKPFIYQYFS 353
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 549 VVCSSPPIAAAITSYPGFFVYGPL 478
V S+P +++ TSYP FV PL
Sbjct: 92 VTTSAPAASSSATSYPATFVSTPL 115
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 124 LKSYSSWSVLYYDLGRFRRECNKS 195
L Y +VLY++ G FRR C+ S
Sbjct: 1431 LVEYGPPAVLYHNNGHFRRMCDGS 1454
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 7.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -1
Query: 534 PPIAAAITSYPGFFVYGPLGPKP 466
P +A +P F+ GPL P P
Sbjct: 214 PDSSAPTIDFPALFMQGPLAPPP 236
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.0 bits (52), Expect = 7.4
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 517 YYIISRFFCIWSS-RSKTCDSTVYKLRVDSFKLFISYIHLVQFPRN 383
Y ++ F+ + +S K + +++D F +FI+++H+ F N
Sbjct: 493 YVLLPSFYILLNSFNQKLMEYFKGFVKLDYFSIFITFLHVCSFGSN 538
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 25.0 bits (52), Expect = 7.4
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 134 IVAGP-FCTM-TLGDLGANVIKVESLSGDEARKWGPPFMKDCGDSYYFQSVNRNKKSICI 307
+VAG +C + +L D+ IK + L G A+ +G + GD Y K I
Sbjct: 379 LVAGKSWCKVRSLVDVNKKSIK-QVLPGQAAQVYGWKDLPIAGDLAYEVKSESEAKRILS 437
Query: 308 DFKSQEGKKIIYDLAK 355
D Q ++ Y+LA+
Sbjct: 438 DIYRQSNEQNFYELAE 453
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = -1
Query: 495 FVYGPLGPKPVIAQYISLGLTVLSFSYPTSIWSSFPGMKFSTSTSHFF 352
FV KP + + G+ L F YP W F M++ + FF
Sbjct: 29 FVNNTTISKPYFSTFFEGGIHSLLFFYPKRNWWFFIKMRYLSFFFEFF 76
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/49 (18%), Positives = 25/49 (51%)
Frame = -1
Query: 462 IAQYISLGLTVLSFSYPTSIWSSFPGMKFSTSTSHFFARSYIIFFPSCD 316
+ Y++ + +++ +S+W + + + ++F II+ PSC+
Sbjct: 307 VGVYLAGTAFLYNYTNGSSVWQTHMEGLMNKALDYYFTSDKIIYEPSCE 355
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 535 STHSCCYYIISRFFCIWSSRSK 470
S+ S Y+I FF +W++R K
Sbjct: 566 SSFSLAVYVIVDFFSLWTTRHK 587
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,252,681
Number of Sequences: 5004
Number of extensions: 44547
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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