Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e14
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0699 + 10513013-10513092,10513518-10513599,10513710-105138...    27   7.5  
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760...    27   7.5  
08_01_0220 - 1751367-1752854                                           27   10.0 
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417...    27   10.0 
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435...    27   10.0 

>03_02_0699 +
           10513013-10513092,10513518-10513599,10513710-10513826,
           10514125-10514187,10514595-10514699,10514777-10514827,
           10515002-10515322,10515423-10515629,10515708-10516001
          Length = 439

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/73 (21%), Positives = 29/73 (39%)
 Frame = -1

Query: 543 CSSPPIAAAITSYPGFFVYGPLGPKPVIAQYISLGLTVLSFSYPTSIWSSFPGMKFSTST 364
           C SP    A++   GF+       K ++  + SLG  V        +W  FPG       
Sbjct: 335 CLSPEGLKAMSDVVGFYKENT---KIIVDTFTSLGFNVYGAKNAPYVWVHFPGRNSWDVF 391

Query: 363 SHFFARSYIIFFP 325
           +    +++++  P
Sbjct: 392 AEILEKAHVVTTP 404


>02_05_0373 +
           28374298-28374380,28375126-28375303,28375975-28376065,
           28376162-28376256,28376379-28376468,28376789-28376837,
           28376941-28377079,28377224-28377340,28377437-28377527,
           28377604-28377746,28378009-28378123,28378439-28378483,
           28378565-28378645
          Length = 438

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +2

Query: 311 FKSQEGKKIIYDLAKKCDVLVENFIPGKLDQMDVGYEKLKTVNPKLIYCAITGFGPRGPY 490
           FKS  G     D  +   VL+   +    + MD GY +   ++P+++   IT  G R P+
Sbjct: 92  FKSYFGGAFDEDAIRNNFVLIYELLD---EIMDFGYPQ--NLSPEILKLYITQEGVRSPF 146

Query: 491 TKKP 502
           + KP
Sbjct: 147 SSKP 150


>08_01_0220 - 1751367-1752854
          Length = 495

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 176 GANVIKVESLSGDEARKWGPPFMKDCGDSY 265
           G  VI V   SGD A K  P FMK C + +
Sbjct: 172 GRRVIDVGLCSGDGAAKRQPAFMKICQERH 201


>05_07_0173 +
           28140484-28140869,28141079-28141481,28141719-28141781,
           28142350-28142535,28144695-28145076,28145689-28145780,
           28145988-28146737,28146969-28147100,28147149-28147247,
           28147977-28148132,28150187-28150317,28150798-28151254,
           28151327-28151668,28152137-28153001,28153112-28153170,
           28153806-28154261,28154835-28154873,28155016-28155201
          Length = 1727

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +2

Query: 266 YFQSVNRNKKSICIDFKSQEGKKIIYDLAKKCDVLVENFIPGKLDQMDVGYEKLKTV 436
           + Q V   KK  C+  K   G+ +     K+ D L++    G+L ++    +KLK +
Sbjct: 700 FLQVVGSGKKIDCVITKCSLGETLSEIPTKEYDQLMDTHAKGRLSRLITILDKLKLI 756


>04_04_1354 -
           32841778-32841983,32842079-32843093,32843184-32843518,
           32843590-32844019,32844155-32844214,32844531-32844651,
           32845321-32846132
          Length = 992

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
 Frame = +2

Query: 5   IKMEIFQNF----RRCVLRSQIVISKL-KYSTKLDGLL 103
           +K+++F+ F    RRC  RS +VIS   K+ T   GLL
Sbjct: 290 VKLDVFEKFVQELRRCQTRSLMVISLCWKFGTSKAGLL 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,879,915
Number of Sequences: 37544
Number of extensions: 266388
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)