Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17e14
(552 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40424-2|AAA81458.3| 343|Caenorhabditis elegans Hypothetical pr... 70 1e-12
Z48638-7|CAA88571.2| 340|Caenorhabditis elegans Hypothetical pr... 66 1e-11
Z81119-1|CAB03331.1| 363|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical p... 28 3.9
Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical p... 28 3.9
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 28 3.9
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 28 3.9
AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel... 28 3.9
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 28 3.9
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 28 3.9
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 28 3.9
Z81476-5|CAB03916.1| 332|Caenorhabditis elegans Hypothetical pr... 27 6.8
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 27 6.8
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 27 6.8
U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical pr... 27 6.8
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 27 6.8
AF024503-3|AAG24098.3| 331|Caenorhabditis elegans Serpentine re... 27 9.0
>U40424-2|AAA81458.3| 343|Caenorhabditis elegans Hypothetical
protein C24A3.4 protein.
Length = 343
Score = 70.1 bits (164), Expect = 1e-12
Identities = 46/150 (30%), Positives = 75/150 (50%)
Frame = +2
Query: 98 LLNDVHVLDLSRIVAGPFCTMTLGDLGANVIKVESLSGDEARKWGPPFMKDCGDSYYFQS 277
LL+ + V++L + PFC M L D GA+V ++ + P ++ Q
Sbjct: 4 LLSGIKVVELGGLAPVPFCGMILADFGADVTVIDKKN---------PTVE--------QR 46
Query: 278 VNRNKKSICIDFKSQEGKKIIYDLAKKCDVLVENFIPGKLDQMDVGYEKLKTVNPKLIYC 457
+NR K D + E K + DL + DVL++ + PG L++M + L N LI C
Sbjct: 47 MNRGKSMKEFDLRKSEDIKKVRDLCRTSDVLLDPYRPGTLEKMGLDPLSLWNDNKGLIIC 106
Query: 458 AITGFGPRGPYTKKPGYDVIAAAMGGLLHT 547
I+G+G G +++ G+D+ AM G+L T
Sbjct: 107 RISGYGQTGRMSQEAGHDINYVAMSGMLPT 136
>Z48638-7|CAA88571.2| 340|Caenorhabditis elegans Hypothetical
protein ZK892.4 protein.
Length = 340
Score = 66.5 bits (155), Expect = 1e-11
Identities = 43/149 (28%), Positives = 76/149 (51%)
Frame = +2
Query: 101 LNDVHVLDLSRIVAGPFCTMTLGDLGANVIKVESLSGDEARKWGPPFMKDCGDSYYFQSV 280
L+ + V++++ + P C M L D GA+V ++ + P ++ Q +
Sbjct: 5 LSGIKVVEIAGLAPVPHCGMMLADFGADVTVIDKKN---------PAIE--------QRL 47
Query: 281 NRNKKSICIDFKSQEGKKIIYDLAKKCDVLVENFIPGKLDQMDVGYEKLKTVNPKLIYCA 460
NR K +D K+ E K + DL + DVL++ + PG L++M + L N LI C
Sbjct: 48 NRGKTMKQLDLKNPEDIKKVRDLCQTSDVLLDPYRPGTLEKMGLDPSTLWNNNKGLIICK 107
Query: 461 ITGFGPRGPYTKKPGYDVIAAAMGGLLHT 547
I+G+G G +++ G+D+ A+ G+L T
Sbjct: 108 ISGYGQTGRMSQETGHDINYVALSGMLPT 136
>Z81119-1|CAB03331.1| 363|Caenorhabditis elegans Hypothetical
protein T10H4.2 protein.
Length = 363
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 408 SIWSSFPGMKFSTSTSHFFARSYIIFFPSCDLKSIQMLFLFLFT 277
+IW SF M S + HFF R + P +K ++F +T
Sbjct: 96 TIWCSFYAMMLSLLSIHFFYRYTSVTAPILLMKRFSCRYIFKYT 139
>Z81072-15|CAB03026.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 28.3 bits (60), Expect = 3.9
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Frame = +2
Query: 53 QIVISKLKYSTKLDG---LLNDVHVLDLSRIVAGPFCTMTLG-DLGANVIKVESLSGDEA 220
Q+ SK KLD LL+D+H S PFC LG + +I E + +EA
Sbjct: 35 QVTFSKAMEVAKLDCQKCLLHDMHSSKSSNCRDNPFCIHRLGLEKFEKLITQEQETKEEA 94
Query: 221 RKWGPPFMKDCGDSYYFQSVNRN----KKSICIDFKSQEGKKIIYDLAKKCDVLVENFIP 388
+K +D D N + + F E +++IYD ENF+P
Sbjct: 95 KK--DQKRRDLNDQPAGLINGGNFCYVNSFLQVWFNVPEFRQLIYDFRPS-----ENFVP 147
Query: 389 GKLDQMDV 412
+ +M+V
Sbjct: 148 PEAPRMNV 155
>Z81048-10|CAB02845.2| 1262|Caenorhabditis elegans Hypothetical
protein F30A10.10 protein.
Length = 1262
Score = 28.3 bits (60), Expect = 3.9
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Frame = +2
Query: 53 QIVISKLKYSTKLDG---LLNDVHVLDLSRIVAGPFCTMTLG-DLGANVIKVESLSGDEA 220
Q+ SK KLD LL+D+H S PFC LG + +I E + +EA
Sbjct: 35 QVTFSKAMEVAKLDCQKCLLHDMHSSKSSNCRDNPFCIHRLGLEKFEKLITQEQETKEEA 94
Query: 221 RKWGPPFMKDCGDSYYFQSVNRN----KKSICIDFKSQEGKKIIYDLAKKCDVLVENFIP 388
+K +D D N + + F E +++IYD ENF+P
Sbjct: 95 KK--DQKRRDLNDQPAGLINGGNFCYVNSFLQVWFNVPEFRQLIYDFRPS-----ENFVP 147
Query: 389 GKLDQMDV 412
+ +M+V
Sbjct: 148 PEAPRMNV 155
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 466 CDSTVYKLRVDSFKLFISYIHLVQF 392
CDS+ R F +FIS IHL+ F
Sbjct: 110 CDSSYLSNRWSQFSVFISIIHLLSF 134
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 466 CDSTVYKLRVDSFKLFISYIHLVQF 392
CDS+ R F +FIS IHL+ F
Sbjct: 110 CDSSYLSNRWSQFSVFISIIHLLSF 134
>AF045640-7|AAU05589.1| 978|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
b protein.
Length = 978
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 466 CDSTVYKLRVDSFKLFISYIHLVQF 392
CDS+ R F +FIS IHL+ F
Sbjct: 168 CDSSYLSNRWSQFSVFISIIHLLSF 192
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 466 CDSTVYKLRVDSFKLFISYIHLVQF 392
CDS+ R F +FIS IHL+ F
Sbjct: 168 CDSSYLSNRWSQFSVFISIIHLLSF 192
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 466 CDSTVYKLRVDSFKLFISYIHLVQF 392
CDS+ R F +FIS IHL+ F
Sbjct: 168 CDSSYLSNRWSQFSVFISIIHLLSF 192
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 466 CDSTVYKLRVDSFKLFISYIHLVQF 392
CDS+ R F +FIS IHL+ F
Sbjct: 140 CDSSYLSNRWSQFSVFISIIHLLSF 164
>Z81476-5|CAB03916.1| 332|Caenorhabditis elegans Hypothetical
protein C25F9.8 protein.
Length = 332
Score = 27.5 bits (58), Expect = 6.8
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 263 YYFQSVNRNKKSICI-DFKSQEGKKIIYDLAKKCDVLVENFIPGKLDQ 403
+YF R+ C+ D S +I Y K DVL+EN IP DQ
Sbjct: 140 FYFDEHVRHAAFACVADSNSCACPQIAY---KALDVLIENLIPSASDQ 184
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 248 DCGDSYYFQSVNRNKKSICIDFKSQEGKKIIYDLAKKCDVL 370
DC + +F SV N + ++F + GK + + +K DV+
Sbjct: 622 DCDEFSFFVSVRLNIPTKILNFSEEFGKCVSLHILRKLDVI 662
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 248 DCGDSYYFQSVNRNKKSICIDFKSQEGKKIIYDLAKKCDVL 370
DC + +F SV N + ++F + GK + + +K DV+
Sbjct: 622 DCDEFSFFVSVRLNIPTKILNFSEEFGKCVSLHILRKLDVI 662
>U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical protein
R07E4.1b protein.
Length = 986
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +2
Query: 194 VESLSGDEARKWGPPFMKDCGDSYYFQSVNRNKKSICIDFKSQEGKKIIYDLAKKCDV-L 370
+ +L+G E + P + D + +S+N + D + +G KI + + +
Sbjct: 851 LNNLNGIEEKNLTPDRPQIKEDKIFLESIN---VMVGYDCQIPKGTKIALSVTQSTEAGE 907
Query: 371 VENFIPGKLDQMDVGYEKLKTVNPKLIYCAITGFGPR 481
V NF+ ++ + G + T+N C + FG R
Sbjct: 908 VVNFVIEQIAKSAAGIDNEITLNDSSELCLVAAFGQR 944
>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical protein
R07E4.1a protein.
Length = 1122
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +2
Query: 194 VESLSGDEARKWGPPFMKDCGDSYYFQSVNRNKKSICIDFKSQEGKKIIYDLAKKCDV-L 370
+ +L+G E + P + D + +S+N + D + +G KI + + +
Sbjct: 987 LNNLNGIEEKNLTPDRPQIKEDKIFLESIN---VMVGYDCQIPKGTKIALSVTQSTEAGE 1043
Query: 371 VENFIPGKLDQMDVGYEKLKTVNPKLIYCAITGFGPR 481
V NF+ ++ + G + T+N C + FG R
Sbjct: 1044 VVNFVIEQIAKSAAGIDNEITLNDSSELCLVAAFGQR 1080
>AF024503-3|AAG24098.3| 331|Caenorhabditis elegans Serpentine
receptor, class j protein6 protein.
Length = 331
Score = 27.1 bits (57), Expect = 9.0
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -1
Query: 459 AQYISLGLTVLSFSYPTSIWSSFPGMKFSTSTSHFFARSYIIFFPSCDLKSIQMLFLF 286
A +I+ G + +Y S +F + ++ HF R +I+F P K +Q L +F
Sbjct: 74 ATFITDGFFTENANYAISSRCTFIAISYALLIIHFVYRYFILFHPHLVDKMLQPLGVF 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,374,161
Number of Sequences: 27780
Number of extensions: 252543
Number of successful extensions: 595
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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