Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e14
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.51 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.51 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.89 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   4.8  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   4.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 389  GKLDQMDVGYEKLKTVNPKLIYCAITGFGPRG 484
            G +   +VGY +  + NP   + +++G G  G
Sbjct: 1037 GDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1068


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 389  GKLDQMDVGYEKLKTVNPKLIYCAITGFGPRG 484
            G +   +VGY +  + NP   + +++G G  G
Sbjct: 1033 GDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1064


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 408 SIWSSFPGMKFSTSTSHFFARSYI 337
           ++WS  P M +  ST+H  A+ ++
Sbjct: 99  ALWSLVPHMAWQLSTAHLLAQLFL 122


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 543 CSSPPIAAAITSYPGFFVY 487
           CSS P AA I+    FF+Y
Sbjct: 120 CSSHPTAAFISYGTLFFIY 138


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 543 CSSPPIAAAITSYPGFFVY 487
           CSS P AA I+    FF+Y
Sbjct: 119 CSSHPTAAFISYGTLFFIY 137


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 152 KTDQLLYDLSPK 117
           +TD+LLY + PK
Sbjct: 390 RTDELLYQMIPK 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,036
Number of Sequences: 438
Number of extensions: 3258
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)