Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e13
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    28   0.57 
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    26   1.7  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   4.0  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   4.0  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   5.3  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    24   7.0  

>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 0.57
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 243 KLLLITHFSWLISLLLNKGINDICRYNNVLGSINK 139
           +LL+ T   WL  L++   + D+  +  ++G INK
Sbjct: 228 ELLVGTQHEWLHDLVIAMNVGDLPLFERLMGQINK 262


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 26  VSHRFESSVSEKCGLGLGLFTPLINLVKCM 115
           VS   E+S SEK  L L LF  +I+L KC+
Sbjct: 54  VSKFTENSKSEKRKLQLELFQEIIDLKKCI 83


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 137 YLFIEPRTLLYLQISLIPLFNSKLI 211
           +LF+ P TLL+L IS + +  ++L+
Sbjct: 260 WLFLNPTTLLFLLISFVYIKPARLL 284


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 111 VCMYVLRLNIYLLNLGHCCTYKYH 182
           + + V+ +N +   L  CC Y YH
Sbjct: 30  IILSVIFINFFFFYLCRCCVYFYH 53


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 216 WLISLLLNKGINDICRYNNVLGSINKY 136
           WL+     K +NDI    N+LG   +Y
Sbjct: 581 WLLYAKERKNVNDIAGARNILGRAFEY 607


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 41  ESSVSEKCGLGLGLFTPLINLVKCMYVCTTT*YLF--IEPRTLLYLQISLIPLFNSKLIS 214
           +SSV+E+  LGL  + P +N  K +        +   +EP   L +Q+ L     + + S
Sbjct: 357 DSSVTEEVVLGLLRYWPKVNSSKEVLFLNEIEDIIEVMEPSEFLKIQVPLFHKLATSISS 416

Query: 215 HEKCVINRSLF 247
               V  R+L+
Sbjct: 417 QNFQVAERALY 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,432,295
Number of Sequences: 5004
Number of extensions: 26581
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)