Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e11
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.11 
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    30   0.26 
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    28   0.80 
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    26   4.2  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.6  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    25   5.6  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   7.4  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   9.8  

>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 249

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -1

Query: 532 CPHSLLIYYMRSVL*QLCPLYRCHLIGFVLI*IHLLLC-FFVANRMAKAVQPF 377
           C H+L +   RS+  +L P  + +L+GF  + I +L C ++    M + +QPF
Sbjct: 103 CKHALFVDKCRSISNKLGPREQVYLVGFDTL-IRILDCKYYKEKAMQQVLQPF 154


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -2

Query: 312 PLFWIFSKKIWMYTEVKWSKCCRDFCCTEKSAG-YSICANTSYI*STIHFV-VSKTSFGH 139
           P  W FS  +W+Y  ++ +  C D   T  SA  YS   N+ +  S++ F  +    FG+
Sbjct: 45  PSLWSFSPSLWIY--IRGTVLCADCIFTAGSANEYSAVQNSVFQVSSLMFYGLMMEFFGY 102

Query: 138 EF 133
            F
Sbjct: 103 SF 104


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 189 KMYLRKWSNQQISQYSRNLYSTSTILL 269
           K YLR W+ Q +S    N Y TS ++L
Sbjct: 212 KRYLRNWTTQVLSIILPNYYETSPLVL 238


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 181 LNIRCICANGVTSRFLSTAEISTALRPFYFSVHPDLFGKYPEQRKIN--EQSLQQLSAFL 354
           L ++ I  N  ++    TA  S+     YF  HP +  +Y E  K+N  EQ +  LS   
Sbjct: 348 LLLQLILENIKSADLAETAASSSLHLSLYFKEHPIVHAQYQEINKLNNSEQIIIVLSVLS 407

Query: 355 EAQ 363
           + +
Sbjct: 408 DGR 410


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 510 ITCVQYFNNCVPCIAAI*LDLY*FKFTFCCVFLSQI 403
           I C+QY   C+  I +I  D   F   F   FLS+I
Sbjct: 124 ILCLQYLQGCLIPIVSIIYDFNEFLSPFTKSFLSKI 159


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 147 NLFSTLQNVL*TKYKMYLRKWSNQQISQYSRNLYSTSTILLQCTSR--SFWKIS 302
           N+ ST + VL T Y    ++W++   +   ++ Y+ +  + +C SR  + W +S
Sbjct: 308 NVSSTGERVLTTDYNNLKKQWASISPNITYKHSYNPNGTIPECPSRNKTSWAVS 361


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +1

Query: 145 KTCFRHYKMYCRLNIRCICANGVTSRFLSTAEISTALRPFYFSVHPDLFGKYPEQRK 315
           K C   Y  +C     C+ A    +  L    +ST L P YF V        P Q+K
Sbjct: 420 KRCINRYDHHCPWTGNCVGARNHRTFLLFVFTLST-LIPIYFYVAFYYLQNIPIQKK 475


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 361  QQSRRRMVVPPLPFYLRQKNTAEGEFKLVQIQLNGSDT 474
            Q  +RR ++PPL    RQ    +  +K   ++ NG+ +
Sbjct: 907  QYQKRRNIIPPLCHTCRQPFNEQDVYKPFFVKNNGTQS 944


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,673
Number of Sequences: 5004
Number of extensions: 50527
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)