Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17e11
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 31 0.46
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 30 1.1
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 30 1.1
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 30 1.4
05_04_0422 + 21122099-21122194,21122353-21122510,21122651-211228... 29 1.9
05_06_0083 + 25429958-25429967,25431035-25431144,25431286-254313... 29 3.3
04_01_0022 + 324422-324445,324870-325265,325366-325546,325781-32... 29 3.3
02_02_0440 - 10273032-10273259,10273423-10273461,10273875-102741... 29 3.3
06_01_1053 - 8328902-8329156,8330538-8330804,8330895-8332343,833... 28 4.3
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 28 5.7
01_07_0303 + 42615578-42615709,42616273-42616312,42616393-426164... 28 5.7
02_05_1094 + 34060262-34060385,34061256-34061428,34061505-340616... 27 7.5
10_08_0842 - 20954712-20957738 27 10.0
>08_01_0033 +
244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 31.5 bits (68), Expect = 0.46
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 296 FPKRSGCTLK*NGRSAVEISAVLRNLLVTPFAQIHLIFSLQY 171
FPK GCT+ G ++ E+ V + + T FA HLI +
Sbjct: 467 FPKPLGCTILLRGANSEELKKVKQVMHYTVFAAYHLILETSF 508
>12_01_0818 +
7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 296 FPKRSGCTLK*NGRSAVEISAVLRNLLVTPFAQIHLIFSLQY 171
F K GCT+ G ++ E+ V R L T FA HLI +
Sbjct: 524 FRKPLGCTILLKGSTSEELKKVKRVLHFTVFAAYHLILETSF 565
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 296 FPKRSGCTLK*NGRSAVEISAVLRNLLVTPFAQIHLIFSLQY 171
F K GCT+ G ++ E+ V R L T FA HLI +
Sbjct: 479 FRKPLGCTILLKGSTSEELKKVKRVLHFTVFAAYHLILETSF 520
>01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +1
Query: 304 EQRKINEQSLQQLSAFLEAQQSRRRMVVPPLPFYLRQKNTAEGEFKLVQIQ----LNGSD 471
E ++INE+ ++ L RR +VP + F N E +K+++ + SD
Sbjct: 827 EIKEINEKKRKEDDVLLAIAAGNRRPIVPNMSFDYVDSNIHEDMYKIIKYSCGEVCSSSD 886
Query: 472 TRDTVVKV 495
D VV++
Sbjct: 887 QLDKVVRI 894
>05_04_0422 +
21122099-21122194,21122353-21122510,21122651-21122866,
21122965-21123379
Length = 294
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 252 CCRDFCCTEKSAGYSICANTSYI*STIHFVV 160
CCR FC ++A +CA TS+I I FV+
Sbjct: 137 CCRSFCIPSETARV-VCAITSWIVPVIVFVL 166
>05_06_0083 +
25429958-25429967,25431035-25431144,25431286-25431342,
25431828-25431936,25432329-25432513,25432595-25432683,
25432877-25433132,25433623-25433865,25433955-25434266
Length = 456
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1
Query: 46 KYCDGSIIQYDSHKVNLVFQFYTAKVFILKFVAKTCFRHYKMYC--RLNIRCICANGVTS 219
K+ G I+ + V F + V + + + C+ + MYC R I C+ T
Sbjct: 43 KFLIGLILMVPVYAVQSFFSLLNSNVAFICELMRDCYEAFAMYCFERYLIACLGGEESTI 102
Query: 220 RFL 228
RF+
Sbjct: 103 RFM 105
>04_01_0022 +
324422-324445,324870-325265,325366-325546,325781-326072,
326389-326461,326610-326700,326815-326894,326992-327234
Length = 459
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 512 ILHAFSTLTTVSLVSLPFNWICTNLNSPSAVFF 414
IL FS+LTT S+V+ + WI + VFF
Sbjct: 340 ILGLFSSLTTTSMVARRYVWIYATIQFLFVVFF 372
>02_02_0440 -
10273032-10273259,10273423-10273461,10273875-10274123,
10274203-10274329,10275009-10275251,10275359-10275457,
10275566-10275681,10275813-10276039,10276164-10276276,
10276402-10276522,10276641-10276855,10277042-10277225,
10277739-10278048,10278155-10278249,10278473-10278485
Length = 792
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 359 LNNLEGEWLYRLCHSICD 412
+NN EG W +L SICD
Sbjct: 677 INNTEGSWFIQLASSICD 694
>06_01_1053 -
8328902-8329156,8330538-8330804,8330895-8332343,
8332461-8332619,8333246-8333372,8333444-8333775,
8333859-8334593,8334735-8335073,8335160-8335313,
8335405-8336154,8336242-8336372
Length = 1565
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -3
Query: 293 PKRSGCTLK*NGRSAVEISAVLRNLLVTPFAQIHLIFSLQYI 168
P+R GCT+ G S E+ V L FA HL Y+
Sbjct: 452 PRRLGCTILLRGTSHEELRRVKLALQFALFAAYHLSLETSYL 493
>03_04_0090 + 17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 27.9 bits (59), Expect = 5.7
Identities = 22/104 (21%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Frame = +1
Query: 196 ICANGVTSRFLSTAEISTALRPFYFSVHPDLF----GKYPEQRKINEQSLQQLSAFLEAQ 363
+ A+G+ L+ + LRP + ++P+LF P++ K++ + + L+ L AQ
Sbjct: 751 LSASGILHNKLNFQMMPHQLRPSSYPINPELFLILEQAKPDEEKLHRRLIFDLANELLAQ 810
Query: 364 Q-SRRRMVVPPLPFYLRQKNTAEGEFKLVQIQLNGSDTRDTVVK 492
Q V + F+ +K + FK + +++ +R ++++
Sbjct: 811 QMDANHTVNSSVQFFQSKKLSGWQLFKDLCAEIDMIQSRSSMIR 854
>01_07_0303 +
42615578-42615709,42616273-42616312,42616393-42616477,
42616634-42616813,42618274-42618354,42618890-42619011,
42619867-42620723,42621656-42621897,42622107-42622200,
42622306-42622476,42622695-42622740,42624101-42624111,
42624141-42624392
Length = 770
Score = 27.9 bits (59), Expect = 5.7
Identities = 7/29 (24%), Positives = 18/29 (62%)
Frame = -1
Query: 220 CWLLHLRKYILYLVYNTFCSVENKFWPRI 134
CW++ + I+ + ++ C++ N +WP +
Sbjct: 28 CWMMMMMSLIIDVCLDSACALYNNWWPML 56
>02_05_1094 +
34060262-34060385,34061256-34061428,34061505-34061686,
34061789-34062073,34062160-34062218,34062349-34062385,
34062485-34062556,34063613-34063937,34064027-34064410
Length = 546
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 324 FVYFPLFWIFSKKIWMYTEVKWSKCCRDFCCTEKSAGYS 208
+ FPLF I ++ V CC+ CC +S YS
Sbjct: 103 YTAFPLFIIALVWFVLFFLVMLGICCKHCCCPHRSYTYS 141
>10_08_0842 - 20954712-20957738
Length = 1008
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +1
Query: 331 LQQLSAFLEAQQS---RRRMVVPPLPFYLRQKNTAEGEFKLVQIQLNGSD 471
L + +A L+ Q + + RM +PPLPF L + KL + Q D
Sbjct: 593 LAEANALLKLQDNPAGKPRMRIPPLPFLLSSLLQSRAPLKLPEEQFGDDD 642
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,168,218
Number of Sequences: 37544
Number of extensions: 276483
Number of successful extensions: 601
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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