Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e10
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   166   1e-42
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   1.5  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.0  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   2.7  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   4.7  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    25   6.2  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.2  
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces...    25   8.2  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  166 bits (404), Expect = 1e-42
 Identities = 83/153 (54%), Positives = 112/153 (73%), Gaps = 2/153 (1%)
 Frame = +3

Query: 39  KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 212
           KI+K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP
Sbjct: 6   KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65

Query: 213 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 392
            P LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V
Sbjct: 66  QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123

Query: 393 YNAILEDLVFPAEIVGKRIRVKLDGSQLIKVHL 491
           +NAILED+VFP EI+GKR R   DG + IKV L
Sbjct: 124 HNAILEDIVFPTEIIGKRTRQATDGRKTIKVFL 156


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -3

Query: 331 LGLGRILRSPTKTTCLPLNFFSSSRTS 251
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 201 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 293
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 359 KEATLKDIDLCVQCYPRGLGLPC 427
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 321 PKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIVGKR 446
           P  S + R  N+++  RSR   S + + LED+++    V  R
Sbjct: 49  PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 377 P*AWPLLFVSNTSFVAGLRQDLTVSN 300
           P A  +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 15  RKVVKMSTKIIK-ASGAEADSFETSISQALVELETN 119
           R+  K   K I  +SG+E  +F+T+ISQ   E++T+
Sbjct: 22  RRFQKSQKKSISPSSGSELPNFKTTISQNNEEVKTS 57


>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +3

Query: 258 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYNAILEDLVFPAEIV 437
           ++LEK+F G       +  + PK     +   K    RSR L   + A + + VF     
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFF-AKVPEKVFAVVTH 166

Query: 438 GKRIRV 455
           G  IR+
Sbjct: 167 GVDIRL 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,588
Number of Sequences: 5004
Number of extensions: 35945
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)