Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e10
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   186   1e-47
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.     27   7.4  
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.     27   7.4  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL034488-17|CAA22459.2|  316|Caenorhabditis elegans Hypothetical...    27   9.8  
AL034488-16|CAN99708.1|  317|Caenorhabditis elegans Hypothetical...    27   9.8  
AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF098506-1|ABN43085.1|  145|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  186 bits (452), Expect = 1e-47
 Identities = 87/152 (57%), Positives = 118/152 (77%), Gaps = 1/152 (0%)
 Frame = +3

Query: 39  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 218
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 219 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVY 395
           +LKAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+
Sbjct: 67  QLKAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVH 126

Query: 396 NAILEDLVFPAEIVGKRIRVKLDGSQLIKVHL 491
           +A L++LV+PAE+VG+RIRVKLDG ++ KVHL
Sbjct: 127 DAWLDELVYPAEVVGRRIRVKLDGKKVYKVHL 158


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 103 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 213
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +3

Query: 24  VKMSTKIIKASGAEADSFE---TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 194
           +K + K  K   AEA+ ++   T  S+ L ELE       Q +E +  K++E+E+ NK+ 
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301

Query: 195 I 197
           +
Sbjct: 302 V 302


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 125 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 39
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical
           protein C09D8.1b protein.
          Length = 1467

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 445 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 341
           +LP +S  K    R A+ +++N  +   FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426


>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
            C09D8.1a protein.
          Length = 2180

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 445  RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 341
            +LP +S  K    R A+ +++N  +   FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139


>Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical
           protein C09D8.1c protein.
          Length = 1216

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 445 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 341
           +LP +S  K    R A+ +++N  +   FC+LA +
Sbjct: 141 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 175


>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical
           protein C09D8.1b protein.
          Length = 1467

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 445 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 341
           +LP +S  K    R A+ +++N  +   FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426


>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
            C09D8.1a protein.
          Length = 2180

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 445  RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 341
            +LP +S  K    R A+ +++N  +   FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139


>U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical
           protein T19D12.7 protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 326 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDD 198
           L+QD     K +MF    +F   DK  +D  + L+F+  + DD
Sbjct: 167 LQQDFRSFQKVWMFNKTEMFSADDKTFIDSNRSLEFQVLNEDD 209


>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
          Length = 1487

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 445 RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 341
           +LP +S  K    R A+ +++N  +   FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426


>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
          Length = 2200

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 445  RLPTISAGKTKSSRIALYTEVNVLERGLFCLLATR 341
            +LP +S  K    R A+ +++N  +   FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 293 SLCWRP*DPA*AQPQNSCC*QTKEATLKDIDLCVQCYPR 409
           S C+ P  PA  Q Q SC    +++ +      VQC P+
Sbjct: 116 SSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAAVQCVPQ 154


>AL034488-17|CAA22459.2|  316|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10b protein.
          Length = 316

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +3

Query: 168 EIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKT 341
           E E H K   ++   +  +K   +   +L+ E+E++F  + +        LP PS  T
Sbjct: 255 EAECHEKAVDLLKSAVGSVKLVIRYMPKLLDEMERRFERQRIRSTQQSPTLPTPSSST 312


>AL034488-16|CAN99708.1|  317|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10a protein.
          Length = 317

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = +3

Query: 168 EIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKT 341
           E E H K   ++   +  +K   +   +L+ E+E++F  + +        LP PS  T
Sbjct: 256 EAECHEKAVDLLKSAVGSVKLVIRYMPKLLDEMERRFERQRIRSTQQSPTLPTPSSST 313


>AL034393-8|CAA22313.1|  241|Caenorhabditis elegans Hypothetical
           protein Y18D10A.10 protein.
          Length = 241

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 337 LWLGLGRILRSPTKTTCLPLNFF 269
           +W+G  R  R P K +C PL+ F
Sbjct: 143 VWVGAYRKARCPNKPSCTPLDTF 165


>AF098506-1|ABN43085.1|  145|Caenorhabditis elegans Hypothetical
           protein H29C22.1 protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 90  SQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYV 209
           S+A ++LE N D+     E +  K  + E +NK+  + Y+
Sbjct: 33  SRAAIKLENNDDVPELFHENFEFKTCKEERYNKEQTVDYI 72


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,372,721
Number of Sequences: 27780
Number of extensions: 205614
Number of successful extensions: 672
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)