Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e07
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.1  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 54  NTSKWLIEEQNYASTSSERTARP 122
           +T +WL+ E+    TSS  +  P
Sbjct: 72  STGEWLLTEEKLPKTSSNASVEP 94


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/15 (46%), Positives = 14/15 (93%)
 Frame = -3

Query: 53  SLLRRLQYVTLELPY 9
           +LLR++Q +++E+PY
Sbjct: 334 ALLRKMQEMSIEVPY 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 312  PPNRSRYLLPSLSYNHC 262
            PPNR    +P  +YN C
Sbjct: 1648 PPNRKLPPVPGSNYNTC 1664


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 232 EAGASHPGAHAVVIRQRRQEIPGSVRWN 315
           +  AS PG   +V      E+PGS  W+
Sbjct: 403 DVAASGPGLAFLVYPSAVLELPGSSIWS 430


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 25  VTYCNRLNRETHRNG 69
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 25  VTYCNRLNRETHRNG 69
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 25  VTYCNRLNRETHRNG 69
           VT C   N ET+R G
Sbjct: 562 VTKCKATNEETYRGG 576


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 250 GEKHRLLIG 224
           G+KH+LLIG
Sbjct: 184 GQKHKLLIG 192


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,096
Number of Sequences: 438
Number of extensions: 3376
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)