Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e06
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    95   4e-21
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   1.3  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   4.0  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   9.1  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   9.1  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    25   9.1  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 95.5 bits (227), Expect = 4e-21
 Identities = 48/88 (54%), Positives = 59/88 (67%)
 Frame = +1

Query: 76  LQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 255
           +   F+QAAA+VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWE 59

Query: 256 KLAGTSKEDAQKAYIEIVEGLIASIGLK 339
           +L G SKEDA   YI  V+ L    G+K
Sbjct: 60  ELKGKSKEDAASEYISFVDELKTKYGMK 87


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +1

Query: 88   FDQAAANVKNLKALPTDAQLLNLYAHFKQ--ATVGDADPANRPGLLD-LKGKAKFDAWHK 258
            F Q AA+++    +  DA LLN+Y +F+Q  + V +A    +  L + +K +    +W  
Sbjct: 3302 FSQHAASLRICHGI--DAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKD 3359

Query: 259  L-AGTSKEDAQKAYIEIVEGL 318
                  KE A+K++ E+ + L
Sbjct: 3360 TNVYALKESAKKSHAELFKVL 3380


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = +1

Query: 10  TSVRSGRVYRRLTSYPHLINMSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGD 189
           TS +SG   +  T+ P+  N S  E+ +      KN+   P+      L    KQ ++  
Sbjct: 379 TSKKSGLTKK--TNIPYSPN-SNHEEINSIPLRNKNIFVPPSQGHSPLLEKIKKQGSLPS 435

Query: 190 ADPANRPGLLDLKGKAKFD 246
             P N  G+ D+  K+ +D
Sbjct: 436 TTPVNEGGISDIIPKSLYD 454


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 127 LPTDAQLLNLYAHFKQATV 183
           LP +   ++LY HFKQA V
Sbjct: 210 LPAEVTPIDLYNHFKQAGV 228


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -3

Query: 457 WRQKSLMRDDDAKNRAYLYSTLDN-ENYHVLASLKIKSFIL 338
           W QK    D  A+N  YL S +      HV+ S  I S IL
Sbjct: 676 WVQKYFFEDLKARNTLYLISEMRTFLRDHVVPSFHIGSVIL 716


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 91  DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDAD 195
           DQ   NV++  + P   QL+ L+    +A V DAD
Sbjct: 40  DQFFRNVRDTISEPKFTQLMELWLEKSRAEVPDAD 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,088,691
Number of Sequences: 5004
Number of extensions: 40615
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)