Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e05
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022974-5|AAC48036.3|  347|Caenorhabditis elegans Seven tm rece...    28   5.2  
Z66565-4|CAA91480.1|  384|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AC084197-41|AAG23462.3|  493|Caenorhabditis elegans Ligand-gated...    27   6.9  
Z83238-5|CAB05796.1|  304|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p...    27   9.1  
Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical p...    27   9.1  
AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protei...    27   9.1  

>AF022974-5|AAC48036.3|  347|Caenorhabditis elegans Seven tm
           receptor protein 208 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -1

Query: 456 VFDHEIKDIIAELLCTDFEEAALGLSVSLRYRAYAVSGTGPVLVVQNLLVF 304
           +  +++  ++  L C  F    +  SV   YR +AVSG   +   + + +F
Sbjct: 83  LLSYDVLLLLVSLCCAFFGSLMVMFSVQFIYRFWAVSGNNSIKTFEGVRIF 133


>Z66565-4|CAA91480.1|  384|Caenorhabditis elegans Hypothetical
           protein T04F8.4 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 497 NMKSSRLIG*RGSAFSTTRSRISSPNFCVPISRKLHLACLY 375
           NM   R+I   G  FST       P F   + +  H+ C+Y
Sbjct: 93  NMDRQRMIAPEGMMFSTVLIISFHPLFLTRMDKAYHIRCMY 133


>AC084197-41|AAG23462.3|  493|Caenorhabditis elegans Ligand-gated
           ion channel protein 10 protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -3

Query: 454 FRPRDQGYHRRTFVYRFRGSCTWLVC--IPEIQSICSLWD 341
           +R R     R    YRF   C  L+   +PEIQSIC + +
Sbjct: 386 YRKRRSTVFRGVHNYRFNQECDDLMYSKVPEIQSICMMME 425


>Z83238-5|CAB05796.1|  304|Caenorhabditis elegans Hypothetical
           protein T08G3.6 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 179 PGSYYCSWQHARWYSANLSIKPSR 250
           P + Y SW++ RW +A   +KP R
Sbjct: 234 PCNEYTSWKYYRWTNAVRYVKPGR 257


>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
           protein C36B1.1d protein.
          Length = 1175

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 388 WLVCIPEIQSICSLWDRACPRCTKPLGIPRVRNPHIDPISCRRLCLS*RF 239
           W +C  +  +       ACPR   P     +  P I+    +RLCL  RF
Sbjct: 263 WKLCSEKHDTYTQRDAGACPRVQYPSSPAHLTTPAINLPDAQRLCLYFRF 312


>Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical
           protein C36B1.1a protein.
          Length = 1138

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 388 WLVCIPEIQSICSLWDRACPRCTKPLGIPRVRNPHIDPISCRRLCLS*RF 239
           W +C  +  +       ACPR   P     +  P I+    +RLCL  RF
Sbjct: 263 WKLCSEKHDTYTQRDAGACPRVQYPSSPAHLTTPAINLPDAQRLCLYFRF 312


>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
           protein C36B1.1d protein.
          Length = 1175

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 388 WLVCIPEIQSICSLWDRACPRCTKPLGIPRVRNPHIDPISCRRLCLS*RF 239
           W +C  +  +       ACPR   P     +  P I+    +RLCL  RF
Sbjct: 263 WKLCSEKHDTYTQRDAGACPRVQYPSSPAHLTTPAINLPDAQRLCLYFRF 312


>Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical
           protein C36B1.1a protein.
          Length = 1138

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 388 WLVCIPEIQSICSLWDRACPRCTKPLGIPRVRNPHIDPISCRRLCLS*RF 239
           W +C  +  +       ACPR   P     +  P I+    +RLCL  RF
Sbjct: 263 WKLCSEKHDTYTQRDAGACPRVQYPSSPAHLTTPAINLPDAQRLCLYFRF 312


>AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protein
           protein.
          Length = 1117

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -3

Query: 388 WLVCIPEIQSICSLWDRACPRCTKPLGIPRVRNPHIDPISCRRLCLS*RF 239
           W +C  +  +       ACPR   P     +  P I+    +RLCL  RF
Sbjct: 263 WKLCSEKHDTYTQRDAGACPRVQYPSSPAHLTTPAINLPDAQRLCLYFRF 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,584,994
Number of Sequences: 27780
Number of extensions: 265264
Number of successful extensions: 846
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)