Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e04
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    93   3e-20
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    73   3e-14
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    54   1e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    45   7e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    44   2e-05
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    43   2e-05
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    42   4e-05
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    42   5e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    39   3e-04
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    38   8e-04
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    35   0.005
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    34   0.009
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    29   0.26 
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    28   0.81 
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    27   1.1  
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     27   1.9  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    26   2.5  
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p...    26   3.3  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   4.3  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    24   9.9  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    24   9.9  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 92.7 bits (220), Expect = 3e-20
 Identities = 40/59 (67%), Positives = 52/59 (88%)
 Frame = +3

Query: 288 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 464
           ++   ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP +  RDV+AQA
Sbjct: 5   LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQA 63


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 72.5 bits (170), Expect = 3e-14
 Identities = 36/60 (60%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
 Frame = +3

Query: 288 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 464
           M+   L T  D   V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+   +GRDVIAQA
Sbjct: 6   MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 4/79 (5%)
 Frame = +3

Query: 240 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 407
           +N    D+ S+ G     P  +    + V +T    F+D  LK ELL GI+  GFE+PS 
Sbjct: 10  ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69

Query: 408 IQQRAIMPCIQGRDVIAQA 464
           IQ+ +I   + GRD++A+A
Sbjct: 70  IQEESIPIALSGRDILARA 88


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 44.8 bits (101), Expect = 7e-06
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = +3

Query: 330 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 464
           +TF D NL   L R I+   FEKP+++Q   I   ++G+D++AQA
Sbjct: 14  KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQA 58


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 17/33 (51%), Positives = 28/33 (84%)
 Frame = +3

Query: 327 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 425
           V++F+++ LK ELL+GIY+  F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = +3

Query: 327 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 464
           +E F D+ L E + + I   GFE  + IQ+R+I P + GRDV+  A
Sbjct: 88  IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAA 133


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 42.3 bits (95), Expect = 4e-05
 Identities = 23/43 (53%), Positives = 25/43 (58%)
 Frame = +3

Query: 336 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 464
           F D  LK ELLR I   GFE PS +QQ  I   I G DV+ QA
Sbjct: 53  FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQA 95


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 41.9 bits (94), Expect = 5e-05
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = +3

Query: 336 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 464
           F  M L + LLR I+  GF+ P+ IQ++ I   ++GRDV+  A
Sbjct: 71  FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMA 113


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +3

Query: 333 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 464
           +F  MNL   +L+G+   GFE P+ IQ + I   + G+D++  A
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAA 303


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 37.9 bits (84), Expect = 8e-04
 Identities = 25/91 (27%), Positives = 42/91 (46%)
 Frame = +3

Query: 192 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 371
           M+ S ++ +ED    S N   +   S       +    D+  ++  +TF ++ + +EL  
Sbjct: 1   MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59

Query: 372 GIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 464
                GF+ P+ IQQ AI   +  RDVI  A
Sbjct: 60  ACEKLGFKTPTPIQQEAIPVVLNKRDVIGLA 90


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 35.1 bits (77), Expect = 0.005
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +3

Query: 312 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 464
           D  + V ++    L  + +  I + G+EKP++IQ +AI     GRDVI  A
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVA 462


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 34.3 bits (75), Expect = 0.009
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +3

Query: 327 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVI 455
           V TF++      +L+ +   GFE P+ IQQ+A    + GRD++
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMV 163


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 29.5 bits (63), Expect = 0.26
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 303 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD 449
           LDT+W   V   +  NL+ + +  I +  F  PS I  +  MP +  R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 0.81
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 300 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 392
           T D  WD   E FDD N  +   +GI+   F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 327 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 464
           V  +   +L  E+L  +   GF KP  IQ   I     G D+I +A
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKA 166


>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 277 DLREWTLGHLTPT 315
           DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 330 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 464
           ++F D+ +   L+  + A    +P+ IQ+  I   ++GR+ I  A
Sbjct: 7   KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGA 51


>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 297 QGPFPEVHRNYLDPSMAHFWNPLANL 220
           Q P P VH ++  PS A   NPL ++
Sbjct: 75  QNPPPSVHSSHKQPSKARSPNPLLSM 100


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 306 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR 446
           DTDWD +V +  D++L+    RGI A G  +      + + P +  +
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSK 660


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 273 RNYLDPSMAHFWNPLANLLTFFQTN 199
           +NY++ S+   + PL NLL +   N
Sbjct: 395 KNYMEESLQKTYKPLPNLLQYLILN 419


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 293 VHSRRSIVTTLILRWPIFGILWPI 222
           +H +R +   L++++PIF I W I
Sbjct: 176 LHLQRILAILLLIQFPIFLIWWKI 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,798,559
Number of Sequences: 5004
Number of extensions: 36156
Number of successful extensions: 104
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)