Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17e03
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1646 - 35027475-35027600,35027713-35027826,35027920-350281...    71   1e-12
03_05_0013 - 19718178-19718930,19718997-19719205,19719245-197193...    29   3.4  
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605...    28   5.9  
04_01_0260 - 3506672-3508981                                           28   5.9  

>04_04_1646 -
           35027475-35027600,35027713-35027826,35027920-35028106,
           35028262-35028379,35028699-35028827,35028947-35028998,
           35029525-35029869
          Length = 356

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/86 (37%), Positives = 46/86 (53%)
 Frame = +3

Query: 369 AQLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFAXXXXXXXXXX 548
           AQ + + ++ LP     +  +VRLP PTT  PR K +P PKP TKW++FA          
Sbjct: 80  AQAVADALFALPATEDRDGPMVRLPPPTTRFPREKHLPRPKPPTKWEQFAKMKGITKHKK 139

Query: 549 XXLQWDEQLQKWVPLYGFKKTAAEKE 626
              +WDEQ Q W   YG+ +   +K+
Sbjct: 140 NKREWDEQTQTWKRTYGYDRVNDDKD 165


>03_05_0013 -
           19718178-19718930,19718997-19719205,19719245-19719325,
           19719581-19720613
          Length = 691

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 372 QLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQE 512
           Q  L K   +PT R  + I+V+L      L ++KP   PKP   W+E
Sbjct: 628 QNFLEKETTMPTNRYWK-ILVKLSTLAKKLEQSKPSSTPKPKKVWKE 673


>04_04_1400 -
           33259716-33260069,33260172-33260219,33260471-33260596,
           33260850-33260900,33260963-33261055,33261217-33261272,
           33261465-33261522,33262306-33262365,33262513-33262623,
           33263368-33263949,33264026-33264097
          Length = 536

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/86 (23%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
 Frame = +3

Query: 177 MDIVNEILEREQKKSDKYKPITVEK-HLELEFDLGSLLASDTNDLDIKTLKTNKDSYLLA 353
           M+ +  + + E   ++  K +  E+ +L+L+ D    +A    ++D+KTL  +K    +A
Sbjct: 245 MEALARLAKLEVTNAELAKSLAREQWNLDLQVDQ---VAQLREEVDMKTLTQDKYKRKIA 301

Query: 354 LTRDNAQLLLNKVWELPTERIEEAIV 431
             +  + LL+N++  L   ++EE ++
Sbjct: 302 KMQKTSPLLVNEIESLRRFKLEEEMI 327


>04_01_0260 - 3506672-3508981
          Length = 769

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
 Frame = +3

Query: 348 LALTRDNAQLLLNKVWELPTERIEEAIVVRLPQPTTILPRAK-------PVPVPKPLTKW 506
           + ++RD    L ++VW+       E I V  P P    P A        P P PKP+T +
Sbjct: 431 IQISRDFRNKLFDRVWKNMELAFPERIPVEYPLPPHPYPMAPMEFDLSLPAPPPKPITGF 490

Query: 507 QE 512
            +
Sbjct: 491 DQ 492


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,168,175
Number of Sequences: 37544
Number of extensions: 326039
Number of successful extensions: 937
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)