Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17d24
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 31 0.37
12_02_0642 + 21454142-21454251,21454683-21454872,21454988-214550... 31 0.65
12_02_0639 + 21443480-21443589,21444022-21444211,21444327-214444... 31 0.65
12_02_0633 + 21402847-21402862,21403143-21404975,21405052-214051... 31 0.65
10_08_0848 + 21035446-21035461,21035742-21036233,21036400-210369... 31 0.65
05_03_0187 + 9413575-9414895,9415014-9415289,9415513-9415631,941... 31 0.65
05_03_0065 - 7953414-7953845,7953963-7954081,7954158-7955990,795... 31 0.65
01_06_0544 + 30118208-30118417,30118959-30119063,30119179-301192... 31 0.65
01_04_0076 + 15780981-15780996,15781277-15783109,15783186-157833... 31 0.65
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745... 29 2.6
01_01_0556 + 4090432-4090500,4091414-4092030,4092408-4092533,409... 28 3.5
10_06_0012 - 9586478-9588880 28 4.6
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 27 6.0
04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334 27 6.0
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 27 6.0
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 27 8.0
07_03_1779 - 29458889-29459249,29461107-29461283,29461374-294615... 27 8.0
07_03_1342 - 25891761-25892102,25892588-25893135,25893342-258950... 27 8.0
03_05_0717 + 27097367-27097621,27097744-27097866,27098136-270983... 27 8.0
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 31.5 bits (68), Expect = 0.37
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 158 LVDLEEPAEEDILMSRNGANNQYWLFTRRNQNNHQVITNGNVNSIRNSNYNGNLPLFVIV 337
L D +E + +L+S++ NN N N++ N N NS N Y G + + +
Sbjct: 165 LGDKDEEVDSWLLLSKDSDNNN----NNNNNNDNDNNDNNNSNSSNNGMYFGEVDEYFDL 220
Query: 338 HGWNS 352
G+NS
Sbjct: 221 VGYNS 225
>12_02_0642 +
21454142-21454251,21454683-21454872,21454988-21455069,
21455224-21455802,21455854-21456909,21457133-21457251,
21457369-21457812
Length = 859
Score = 30.7 bits (66), Expect = 0.65
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 157 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 191
>12_02_0639 +
21443480-21443589,21444022-21444211,21444327-21444408,
21444563-21445054,21445221-21446246,21446470-21446588,
21446706-21447149
Length = 820
Score = 30.7 bits (66), Expect = 0.65
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 157 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 191
>12_02_0633 +
21402847-21402862,21403143-21404975,21405052-21405170,
21405288-21405722
Length = 800
Score = 30.7 bits (66), Expect = 0.65
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 35 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 69
>10_08_0848 +
21035446-21035461,21035742-21036233,21036400-21036956,
21037084-21037539,21037886-21038302
Length = 645
Score = 30.7 bits (66), Expect = 0.65
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 35 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 69
>05_03_0187 +
9413575-9414895,9415014-9415289,9415513-9415631,
9415749-9416192
Length = 719
Score = 30.7 bits (66), Expect = 0.65
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 39 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 73
>05_03_0065 -
7953414-7953845,7953963-7954081,7954158-7955990,
7957103-7957559
Length = 946
Score = 30.7 bits (66), Expect = 0.65
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 182 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 216
>01_06_0544 +
30118208-30118417,30118959-30119063,30119179-30119260,
30119415-30121250,30121327-30121445,30121563-30122006
Length = 931
Score = 30.7 bits (66), Expect = 0.65
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 162 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 196
>01_04_0076 +
15780981-15780996,15781277-15783109,15783186-15783304,
15783422-15783724
Length = 756
Score = 30.7 bits (66), Expect = 0.65
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 328 CYCPRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGL 432
C+CP + ++ LRC++ D AG R++ + G+
Sbjct: 35 CFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGI 69
>02_05_1336 +
35773629-35773856,35773931-35774085,35774217-35774549,
35774615-35774927,35776992-35777168,35777281-35777397,
35777532-35777698,35777800-35778024,35778127-35778448,
35778542-35778786,35778993-35779131,35779212-35779304,
35779509-35779577
Length = 860
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 337 PRLEQQRKLRCEHHDPPRLAGRLRLQRYCCGLAWSCQRSIQHCRQWS 477
P L +Q E +P R+ R + ++ C L W+ S+Q +WS
Sbjct: 812 PTLGEQPAQPTESAEPNRIIPRPKERQDCNQLTWTTAPSLQFLNRWS 858
>01_01_0556 +
4090432-4090500,4091414-4092030,4092408-4092533,
4092619-4092895,4093021-4093251
Length = 439
Score = 28.3 bits (60), Expect = 3.5
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +2
Query: 224 YWLFTRRNQNNHQVITNGNVNSIRNSNYNGNLPLFVIVHG---WNSNGNSAVNTMIRPAL 394
YW F RN+ N + + V+S R+ + + HG +S N V + P +
Sbjct: 171 YWRFLHRNRQNTEQESTNQVSSERDVYEPNSYVVVSSAHGSEVVDSGNNGGVARIASPRV 230
Query: 395 LAVSDCNVIVVD 430
A+ C + +D
Sbjct: 231 YALVACFKLALD 242
>10_06_0012 - 9586478-9588880
Length = 800
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 344 WNSNGNSAVNTMIRPALLAVSDCNVIVVDWRGLANGLYNTAVN 472
W++NG + V P L SD N++++D + N +++T VN
Sbjct: 78 WSANGENPVVDPASPELAISSDGNMVILD-QVTKNIIWSTHVN 119
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 27.5 bits (58), Expect = 6.0
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 40 WLNSIVFWQCYPHDPWRQQSL 102
WL+S +F CYP P+ ++++
Sbjct: 769 WLSSFLFNSCYPSGPYERRTI 789
>04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334
Length = 554
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +3
Query: 405 PTATLLLWT--GVVLPTVYTTLPSMEFPV 485
P +T+L+WT G ++ VYTT+P P+
Sbjct: 19 PASTMLVWTQVGEIVFPVYTTMPISTCPL 47
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 248 QNNHQVITNGNVNSIRNSNYNGNLP 322
QN+ QV+ + N++ N N NGN P
Sbjct: 638 QNSSQVMGSQAANNMNNENRNGNYP 662
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 409 LQRYCCGLAWSCQRSIQHCRQWSSQ 483
L+R CC RSI C++W +Q
Sbjct: 1552 LRRSCCPSELDFLRSISRCKKWGAQ 1576
>07_03_1779 -
29458889-29459249,29461107-29461283,29461374-29461573,
29461673-29462752
Length = 605
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/68 (20%), Positives = 29/68 (42%)
Frame = +2
Query: 266 ITNGNVNSIRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLAVSDCNVIVVDWRGLA 445
+ NG++N R YN + + SN + +R ++A +W+G+
Sbjct: 349 VNNGSLNVFRAHEYNATVEFYWAPFLVQSNSDDPQVHSVRDRVIAWRSIAKHAANWKGVH 408
Query: 446 NGLYNTAV 469
++NT +
Sbjct: 409 YLVFNTYI 416
>07_03_1342 -
25891761-25892102,25892588-25893135,25893342-25895012,
25895818-25896745
Length = 1162
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 210 VQTTNTGFS---PDVTKTTIKLLQMAMSTLSGT 299
V + GFS P V TT+KLL ++ +T SG+
Sbjct: 301 VDLSRNGFSGSVPVVNSTTLKLLNLSSNTFSGS 333
>03_05_0717 +
27097367-27097621,27097744-27097866,27098136-27098303,
27098393-27100072
Length = 741
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 430 VHNNNV-AVGDGQQGGADHGVHSGVSVAVPAVDNNKERQVSIVV 302
++N N+ VG GQ GG+ HG+ V + + KE +V V+
Sbjct: 285 IYNGNLYRVGKGQGGGSGHGIQV-FKVEILKSNEYKEVEVPFVI 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,623,686
Number of Sequences: 37544
Number of extensions: 317756
Number of successful extensions: 1143
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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