Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt17d23
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 88 6e-19
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 27 1.5
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 27 2.0
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 26 2.7
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 26 3.5
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch... 26 3.5
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase... 25 4.6
SPAC29B12.11c |||human WW domain binding protein-2 ortholog|Schi... 25 4.6
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 25 6.1
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 6.1
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 25 8.1
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 88.2 bits (209), Expect = 6e-19
Identities = 38/83 (45%), Positives = 52/83 (62%)
Frame = +3
Query: 240 MLTPRFKLTQDDNHIFVTVHAPYTNIGDTEIDVDGENFLFVSSPYFLRLRLPGRIVDDDR 419
M+TP+F+L QD+ +++ VH PY + EID F +PYFL+L LPG ++DDDR
Sbjct: 1 MITPKFELRQDEEFVYLDVHTPYIKAKNVEIDAFNNEVNFCIAPYFLKLELPGNVLDDDR 60
Query: 420 AKGSYTCDSGDFNLTFEKETAGE 488
A SY SG ++ F KET GE
Sbjct: 61 ANASYDISSGFVHIKFPKETPGE 83
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 27.1 bits (57), Expect = 1.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 215 D*KINSIHHAYSTF*INARRQP 280
D I S+HH Y TF +N +++P
Sbjct: 247 DAPIKSVHHFYGTFTLNNQKRP 268
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 26.6 bits (56), Expect = 2.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Frame = -2
Query: 244 SMMYTIDLLVRHQLPLFSIKTDCDA-----VKQW-TDSQKSNKFVT 125
SM+Y +L + +LPL + CD K+W TD ++ + VT
Sbjct: 158 SMLYACSMLYKAKLPLIIVYNKCDVQDSEFAKKWMTDFEEFQQAVT 203
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 26.2 bits (55), Expect = 2.7
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +3
Query: 111 VHGTEVTNLLLFCESVHCLTASQSVLILNKGSWCLTRRSI--VYIMLTPRFKLTQDDNHI 284
+HG +TNL FC L+ + +L + S T+ ++ +Y F++ + ++
Sbjct: 618 LHGFPLTNLQSFCTISSFLSNDFPLSLLTQASMKATKNAVFSLYKRSPKSFRILEP--YM 675
Query: 285 FVTVHAPYTNIGDTEIDVDGE 347
VT+ P +G D+ G+
Sbjct: 676 DVTITTPEEYVGIVSKDLVGK 696
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 3.5
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = -2
Query: 466 NVRLKSPESQVY----EPFARSSSTILPGNRNRRK*GLDTKRKFSP 341
++R +SPE + +P A L + NR+K G + KR F P
Sbjct: 160 HLRARSPEDMILLRETQPLAPLDINTLGVSDNRQKKGTEKKRPFEP 205
>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 253 RGVSMMYTIDLLVRHQLPLFSIK 185
RGV + D+ ++HQLP ++IK
Sbjct: 384 RGVLLQNVDDIKLKHQLPSYTIK 406
>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 4.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 165 NNGLIHKKVTSSLLRYRGLDIS*DLTLIK*LGRSYF 58
+NG++H+ + L YR D + DL LI G S+F
Sbjct: 147 DNGIVHRDLKPENLLYRSKDPNSDL-LIADFGLSHF 181
>SPAC29B12.11c |||human WW domain binding protein-2
ortholog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 25.4 bits (53), Expect = 4.6
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +3
Query: 153 SVHCLTASQSVLILNKGSWCLTRRSIVYIMLTPRFKLTQDDNHIFVTVHAPYTNIGDTEI 332
S+ C S KG CLT + +VYI +D + F +P N+ DT++
Sbjct: 34 SILCKPPSLKSWTCTKGLLCLTNQRLVYI--------AKDTDCDFKDFQSPVANLKDTKL 85
Query: 333 D 335
+
Sbjct: 86 N 86
>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.0 bits (52), Expect = 6.1
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +3
Query: 378 LRLRLPGRIVDDDRAKGSYTCDS---GDFNLTFEKE 476
LRL G ++D D + +YT DS G +L F E
Sbjct: 215 LRLLRYGSLIDPDTPESAYTFDSQDLGTLDLVFSDE 250
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 309 TNIGDTEIDVDGENFLFVS 365
TNI +T I +DG NF+ S
Sbjct: 693 TNIAETSITIDGVNFVIDS 711
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -3
Query: 435 CMNLLPDHHQRSCQVIAIEGSKD*TQK 355
C N DH +S Q + + SK T+K
Sbjct: 422 CSNFSTDHENKSLQEVDFDASKPITRK 448
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,276
Number of Sequences: 5004
Number of extensions: 43907
Number of successful extensions: 122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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