Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d23
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0191 + 41885121-41885909,41886152-41886190,41886701-418867...    29   2.0  
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765...    28   4.6  
07_01_0344 - 2490700-2493249                                           27   6.1  
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174...    27   8.1  
03_02_0527 + 9187152-9187514                                           27   8.1  

>01_07_0191 +
           41885121-41885909,41886152-41886190,41886701-41886784,
           41887331-41887413,41887501-41887588,41887736-41887990,
           41888275-41888403
          Length = 488

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 192 LNKGSWCLTRRSIVYIMLTPRFKLTQDDNHIFVTVHAPYTNIGD--TEIDVDGENFLFVS 365
           +N  SW +T  S  +I  TP  +L    + +    + PY+ I D  ++I + G   +  +
Sbjct: 407 VNPASWSVTPSSPAFIHATPGVQLVAGGDSLGQQYNTPYSVINDRGSDIIIVGRGIIRAN 466

Query: 366 SP 371
           +P
Sbjct: 467 NP 468


>03_02_0774 +
           11074508-11074880,11076270-11076370,11076453-11076509,
           11076596-11076690,11077480-11077579,11078272-11078330,
           11078874-11079001,11079362-11079440,11079708-11079795,
           11080490-11080590,11080822-11080900,11081740-11081850,
           11082655-11082750,11082885-11083007,11085750-11085947,
           11086071-11086172,11086570-11086634,11086888-11087008,
           11088540-11088697,11088823-11088973,11089414-11089521,
           11089939-11090031,11090285-11090321,11090659-11090906,
           11091396-11091542,11091929-11092099,11092166-11092175,
           11093360-11093505
          Length = 1114

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 23/74 (31%), Positives = 30/74 (40%)
 Frame = +3

Query: 24  GITMRCFIVC*RNSFYLIIL*GLNLKIYQVHGTEVTNLLLFCESVHCLTASQSVLILNKG 203
           GI + C I   RN   +I L   N   Y VHG  +   +        LT     L L KG
Sbjct: 346 GIAVSCLIYTTRNWKLVIFLNTYNYHFYTVHGMSLAASITQSSLSEQLTPCS--LYLPKG 403

Query: 204 SWCLTRRSIVYIML 245
              ++R  IV  +L
Sbjct: 404 CLIISRVEIVRYLL 417


>07_01_0344 - 2490700-2493249
          Length = 849

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 321 DTEIDVDGENFLFVSSPYFLRLRLPGRIVDDDRAKGSYT 437
           D+  DVDG  ++  SSP    L LPG +     + G  T
Sbjct: 37  DSTTDVDGRRWIGDSSPKNFTLSLPGTVATAPDSDGKET 75


>06_01_1173 +
           10014391-10014678,10015478-10017245,10017333-10017436,
           10017632-10017706,10017887-10017918,10019396-10019482,
           10020848-10021294,10021477-10021630,10022203-10022329,
           10022547-10022632,10022719-10022790,10023083-10023286,
           10023732-10024049
          Length = 1253

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -2

Query: 481 AVSFSNVRLKSPESQVYEPFARSSSTILPGNRNRRK*GLDTKRKFSPSTSISVSP 317
           +V  +   +  P   +Y+      +TI  G  N R   LD++ +  PS  ISV P
Sbjct: 218 SVQSNRPSISDPVPSIYDIVDDDYTTIPIGRVNARSTRLDSRAERLPSQGISVGP 272


>03_02_0527 + 9187152-9187514
          Length = 120

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 373 TSFDCDYLAGSLMMIGQKVHTLVIRETSISHLKKKL 480
           T+FD  +   S++ +GQ+VH L IR   + H + KL
Sbjct: 24  TTFDV-FRMESMVALGQQVHLLDIRHFGLVHHRLKL 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,349,421
Number of Sequences: 37544
Number of extensions: 259152
Number of successful extensions: 517
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)