Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d23
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125455-2|AAP13747.2|  431|Caenorhabditis elegans Hypothetical ...    57   8e-09
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z69902-11|CAA93766.2|  935|Caenorhabditis elegans Hypothetical p...    28   3.2  
AL033535-1|CAB70217.1|  935|Caenorhabditis elegans Hypothetical ...    28   3.2  
Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF067616-2|AAC19188.2|  551|Caenorhabditis elegans Deubiquitylat...    28   4.2  
U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1 prepropro...    27   5.5  
U42436-4|AAF99896.2|  297|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical...    27   5.5  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AF125455-2|AAP13747.2|  431|Caenorhabditis elegans Hypothetical
           protein Y48A5A.1 protein.
          Length = 431

 Score = 56.8 bits (131), Expect = 8e-09
 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
 Frame = +3

Query: 240 MLTPRFKLTQDDNHIFVTVHAPYTNIGDTEIDVDGENFLFVSSPYFLRLRLPGRIVDDDR 419
           MLTP F +TQDD+ + + + AP+ NI + + D     F+F   PYFLRL     + +   
Sbjct: 1   MLTPVFWITQDDDALLIRIRAPHGNIAELDYDHGDYMFVFTCPPYFLRLHFKQMVEEYGS 60

Query: 420 AKGS--YTCDSGDFNLTFEK 473
             GS  +  D G+F++   K
Sbjct: 61  GNGSVEWKSDEGEFHIKVPK 80


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +1

Query: 340  MAKISFLCLVLTSFDCDYLAGSLMMIGQKVHTLVIRETSISHLKK 474
            M+K+ F+ ++LT   C+ +  S  +  Q ++T + RET   H ++
Sbjct: 1902 MSKVPFINMILTCLQCEKMQQSKDVFLQSLYTQLQRETLRDHHRR 1946


>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
           protein K01A6.2 protein.
          Length = 1092

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 303 PYTNIGDTEIDVDGENFLFVSSPYFLRLRLPGRIVDDDRAKG 428
           PYT     E +VDGE++ FVS   F +L   G ++++   +G
Sbjct: 233 PYTTRPPREGEVDGEHYRFVSVDDFNKLLDSGDLLENGTYQG 274


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 441 HKCMNLLPDHHQRSCQVIAIEGSKD 367
           H+CM L   H  RSC+ I+   S+D
Sbjct: 362 HQCMQLCATHPTRSCESISYTKSRD 386


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 441 HKCMNLLPDHHQRSCQVIAIEGSKD 367
           H+CM L   H  RSC+ I+   S+D
Sbjct: 362 HQCMQLCATHPTRSCESISYTKSRD 386


>Z69902-11|CAA93766.2|  935|Caenorhabditis elegans Hypothetical
           protein C47D12.8 protein.
          Length = 935

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 93  NLKIYQVHGTEVTNLLLFCESVHCLTASQSVLILNKGSWCLTRRSIVYIMLTPRFKLTQD 272
           +L +Y +  TE T    + ES++  T S  +LI  +G+  ++R   V     PR K++  
Sbjct: 601 SLHVYWLQYTESTEESRYLESINRETMSFELLIREQGTLLISREFNVDREDAPRLKISTR 660

Query: 273 D 275
           D
Sbjct: 661 D 661


>AL033535-1|CAB70217.1|  935|Caenorhabditis elegans Hypothetical
           protein C47D12.8 protein.
          Length = 935

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +3

Query: 93  NLKIYQVHGTEVTNLLLFCESVHCLTASQSVLILNKGSWCLTRRSIVYIMLTPRFKLTQD 272
           +L +Y +  TE T    + ES++  T S  +LI  +G+  ++R   V     PR K++  
Sbjct: 601 SLHVYWLQYTESTEESRYLESINRETMSFELLIREQGTLLISREFNVDREDAPRLKISTR 660

Query: 273 D 275
           D
Sbjct: 661 D 661


>Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical
           protein F32B4.1 protein.
          Length = 415

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
 Frame = -2

Query: 352 KFSPSTSISVSPMFVYGA*TVTNM---WLSSCVNLKRGVSMMYTIDLLVRHQLPLFSIKT 182
           KFS    I V+P+F      V +    +L +C         +Y     +         K 
Sbjct: 30  KFSEDDLIGVNPIFQQQVIPVADKKLEFLKNCGCKSTVTGKLYDFCYKLPEDEKSIGKKF 89

Query: 181 DCDAVKQWTDSQKSNKFV----TSVPWT*YILRFN 89
           DC  V++W   + S KFV     S+P   ++  FN
Sbjct: 90  DCKFVEEWEKIESSTKFVDLQNDSLPEPVFVTAFN 124


>AF067616-2|AAC19188.2|  551|Caenorhabditis elegans Deubiquitylating
           with usp/ubp andotu domains protein 2 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 382 DCDYLAGSLMMIGQKVHTLVIRETSISHLKKKLP 483
           +C Y A S  + G + H ++ RE    HLKK  P
Sbjct: 333 NCFYRAVSWWLTGVESHHMIFREAVGKHLKKNEP 366


>U68185-1|AAC47444.1| 1042|Caenorhabditis elegans ADM-1
           preproprotein protein.
          Length = 1042

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = +3

Query: 246 TPRFKLTQDDNHIFVTVHAPYTNIGDTEIDVDGENFLFVSSPYFLRLRLPGRIVDDDRAK 425
           T  + L   +++  VT+      +G  ++ ++  NF+F++   F +L   G  V  +R +
Sbjct: 64  TRNYFLKAQEHYSHVTIVIRSNQLGRLKLVLERNNFIFLNQTAFHKLDADGERVIQNRVE 123

Query: 426 GSY 434
             Y
Sbjct: 124 NCY 126


>U42436-4|AAF99896.2|  297|Caenorhabditis elegans Hypothetical
           protein C49H3.9 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 326 CISNVCIRCVNCYEYVVVVL 267
           C+   C++C+ C +Y+  VL
Sbjct: 83  CVKKDCVKCIECEQYLSTVL 102


>AL032626-12|CAA21545.1| 1042|Caenorhabditis elegans Hypothetical
           protein Y37D8A.13 protein.
          Length = 1042

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = +3

Query: 246 TPRFKLTQDDNHIFVTVHAPYTNIGDTEIDVDGENFLFVSSPYFLRLRLPGRIVDDDRAK 425
           T  + L   +++  VT+      +G  ++ ++  NF+F++   F +L   G  V  +R +
Sbjct: 64  TRNYFLKAQEHYSHVTIVIRSNQLGRLKLVLERNNFIFLNQTAFHKLDADGERVIQNRVE 123

Query: 426 GSY 434
             Y
Sbjct: 124 NCY 126


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical
           protein F32H2.5 protein.
          Length = 2586

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = -2

Query: 349 FSPSTSISVSPMFVYGA*TVTNMWLSSCVNLKRGVSMMYTIDLLVRHQLPLFSIKTDCDA 170
           F   ++   S M      TVT   L+ CV       + YT DL    Q P FS+ T C +
Sbjct: 117 FVGCSASETSGMLTQDPDTVTGYTLTGCVRSMFSNRISYTFDL----QGPSFSVDTACSS 172


>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
           protein Y76B12C.7 protein.
          Length = 1454

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 89  VKS*DISSPRYRSNELVTFL*ISPLFDCIAISFNTKQRQL 208
           VKS  +  P Y SN+LV      P+FD +  S + K   L
Sbjct: 452 VKSMCVGRPNYMSNDLVDAKRRDPVFDLVTASGHGKNGAL 491


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,842,857
Number of Sequences: 27780
Number of extensions: 243035
Number of successful extensions: 611
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)