Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt17d22
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    26   2.0  
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy...    26   2.0  
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    25   2.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   4.6  
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    25   4.6  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   4.6  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   4.6  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    24   6.1  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    24   6.1  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    24   8.0  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    24   8.0  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        24   8.0  

>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 51  N*LPAEKRPK-SQKKLERCWKNKKQNKMANFSQRCDPNQMSKDDL 182
           N LP EKR   S   L       KQN +AN S R  PN    D L
Sbjct: 370 NLLPVEKRAAMSPLNLLEPRLINKQNTLANQSPRQPPNAFDADPL 414


>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +1

Query: 61  QRKRDQRARRNWNGAGRTRNKTKWRTSASGATRTRCQKTICKETSQASVRQRS 219
           ++KR +  R+N    G   N+   + + S  T    +  I KE S  S+++++
Sbjct: 25  EKKRKKGERKNVGDKGEKLNEKVLKKAKSVTTNNSLKSEIKKEKSVPSIKEKN 77


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 78  KSQKKLERCWKNKKQNKMANFSQRCDPNQMSK 173
           KSQ  +E  W         NF+Q+  PN  S+
Sbjct: 286 KSQSSIEIDWHEDDDTPTLNFTQKKKPNPASR 317


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 122 LFLVLPAPFQFLLALWSLF 66
           LF+++  PFQ +LAL +L+
Sbjct: 373 LFVIVSGPFQIVLALTNLY 391


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 65  GKETKEPEEIGTVLEEQETKQNGELQPAVRPEPDV 169
           GKE KEPEE     E +E ++ GE +     E ++
Sbjct: 113 GKEAKEPEE-PPKEEAEEPQEGGEEEEEEEEEEEI 146


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 72   RPKSQKKLERCWKNKKQNKMANFSQRCDPNQMSKDDL 182
            +P   + L+R  K  ++ K    S+ CDP Q+S+ D+
Sbjct: 1248 QPIEIELLKRVVKQAEEFKNKMQSEVCDPTQLSEKDV 1284


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 149 VRPEPDVKRRSVRKLHRRQSAKGAHEWMATPRGSISSIMSTALQS 283
           +R  P + RR+ R     + A  + ++M +  GS+ ++ + +LQS
Sbjct: 492 LRKNPTISRRTRRAGTMDRYATASSDYMESNLGSLPNLSTLSLQS 536


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 108 KNKKQNKMANFSQRCDPNQMSKDDL 182
           +N K+NK    +Q  DP   SK++L
Sbjct: 524 RNNKKNKKGKHTQIEDPTAASKEEL 548


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 178 SSFDIWFGSHRWLKFAILFCFLFFQHRSNFFWLFGL 71
           S +D+W G++R  K++     + ++ +   FW F L
Sbjct: 147 SGYDVWLGNNRGNKYSRK--HITYKPKDEEFWNFSL 180


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 71  ETKEPEEIGTVLEEQETKQNGELQPAV-RPEPDVKRRSVRKLHRRQSAKGAHEWMATPR 244
           E KE EEI   LEE+ T ++  L+ ++  P   +  +   K+           + ATPR
Sbjct: 255 EPKEKEEIVGSLEEEGTDESASLEDSLSHPTKSILDQLADKM-EVDGLNNNSNYSATPR 312


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 122 LFLVLPAPFQFLLALWSLF 66
           LF+++  PFQ  LAL +L+
Sbjct: 370 LFIIVSGPFQIALALSNLY 388


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 84  QKKLERCWKNKKQNKMANFSQRCDPNQMSKDDL*GNFTGVSPPKELTNGWL 236
           Q+K E   + KKQN   +FS++   +  S+D      +   P K     W+
Sbjct: 55  QQKHENAQQGKKQNNSKSFSKKPAIDVHSEDAFPTLLSKTGPSKPRIVSWV 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,348,701
Number of Sequences: 5004
Number of extensions: 24899
Number of successful extensions: 111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)